52 lines
2.5 KiB
Python
52 lines
2.5 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RAnnotationhub(RPackage):
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"""This package provides a client for the Bioconductor AnnotationHub web
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resource. The AnnotationHub web resource provides a central location
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where genomic files (e.g., VCF, bed, wig) and other resources from
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standard locations (e.g., UCSC, Ensembl) can be discovered. The
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resource includes metadata about each resource, e.g., a textual
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description, tags, and date of modification. The client creates and
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manages a local cache of files retrieved by the user, helping with
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quick and reproducible access."""
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homepage = "https://bioconductor.org/packages/AnnotationHub/"
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url = "https://git.bioconductor.org/packages/AnnotationHub"
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list_url = homepage
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version('2.8.3', git='https://git.bioconductor.org/packages/AnnotationHub', commit='8aa9c64262a8d708d2bf1c82f82dfc3d7d4ccc0c')
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depends_on('r-rsqlite', type=('build', 'run'))
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depends_on('r-biocinstaller', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-interactivedisplaybase', type=('build', 'run'))
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depends_on('r-httr', type=('build', 'run'))
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depends_on('r-yaml', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@2.8.3')
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