49 lines
2.0 KiB
Python
49 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Stacks(AutotoolsPackage):
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"""Stacks is a software pipeline for building loci from short-read
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sequences, such as those generated on the Illumina platform."""
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homepage = "http://catchenlab.life.illinois.edu/stacks/"
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url = "http://catchenlab.life.illinois.edu/stacks/source/stacks-1.46.tar.gz"
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version('1.46', '18b0568a4bba44fb4e5be0eb7ee2c08d')
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variant('sparsehash', default=True, description='Improve Stacks memory usage with SparseHash')
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depends_on('perl', type=('build', 'run'))
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depends_on('sparsehash', when='+sparsehash')
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def configure_args(self):
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args = []
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if '+sparsehash' in self.spec:
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args.append('--enable-sparsehash')
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else:
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args.append('--disable-sparsehash')
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return args
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