37 lines
1.8 KiB
Python
37 lines
1.8 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RQvalue(RPackage):
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"""Q-value estimation for false discovery rate control
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This package takes a list of p-values resulting from the simultaneous
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testing of many hypotheses and estimates their q-values and local FDR
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values. The q-value of a test measures the proportion of false positives
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incurred (called the false discovery rate) when that particular test is
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called significant. The local FDR measures the posterior probability the
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null hypothesis is true given the test's p-value. Various plots are
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automatically generated, allowing one to make sensible significance cut-
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offs. Several mathematical results have recently been shown on the
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conservative accuracy of the estimated q-values from this software. The
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software can be applied to problems in genomics, brain imaging,
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astrophysics, and data mining."""
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homepage = "https://bioconductor.org/packages/qvalue"
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git = "https://git.bioconductor.org/packages/qvalue.git"
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version('2.22.0', commit='b4bde8198252737b287fd7f9a4ed697f57fad92c')
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version('2.16.0', commit='5efbe20ef522a45a7a04b681f72bb9a12e2747ae')
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version('2.14.1', commit='b694e4b264f25250eb1d1115e70c07f65767c20e')
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version('2.12.0', commit='7df64ebfcbe69dcbf8b88cb6ef0068bf16979673')
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version('2.10.0', commit='581e5664b4356440a96310897398f01a98ceb81b')
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version('2.8.0', commit='c7bf3315619d42d800f57a36670c25a7495ded72')
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depends_on('r@2.10:', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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