68 lines
3.3 KiB
Python
68 lines
3.3 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RReportingtools(RPackage):
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"""The ReportingTools software package enables users to easily
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display reports of analysis results generated from sources such
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as microarray and sequencing data. The package allows users to
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create HTML pages that may be viewed on a web browser such as
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Safari, or in other formats readable by programs such as Excel.
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Users can generate tables with sortable and filterable columns,
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make and display plots, and link table entries to other data
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sources such as NCBI or larger plots within the HTML page. Using
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the package, users can also produce a table of contents page to
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link various reports together for a particular project that can
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be viewed in a web browser. For more examples, please visit our
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site: http:// research-pub.gene.com/ReportingTools."""
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homepage = "https://bioconductor.org/packages/ReportingTools/"
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url = "https://git.bioconductor.org/packages/ReportingTools"
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version('2.16.0', git='https://git.bioconductor.org/packages/ReportingTools', commit='b1aa0ea302da7f2993ce8087b1d09c11ddf03663')
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depends_on('r@3.4.0:3.4.9', when='@2.16.0')
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depends_on('r-knitr', type=('build', 'run'))
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depends_on('r-biobase', type=('build', 'run'))
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depends_on('r-hwriter', type=('build', 'run'))
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depends_on('r-category', type=('build', 'run'))
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depends_on('r-gostats', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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depends_on('r-limma', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-annotationdbi', type=('build', 'run'))
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depends_on('r-edger', type=('build', 'run'))
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depends_on('r-annotate', type=('build', 'run'))
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depends_on('r-pfam-db', type=('build', 'run'))
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depends_on('r-gseabase', type=('build', 'run'))
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depends_on('r-biocgenerics', type=('build', 'run'))
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depends_on('r-xml', type=('build', 'run'))
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depends_on('r-utils', type=('build', 'run'))
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depends_on('r-deseq2', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-ggbio', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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