eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
28 lines
988 B
Python
28 lines
988 B
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class PacbioDaligner(MakefilePackage):
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"""Daligner: The Dazzler "Overlap" Module. This is a special fork
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required for some pacbio utilities."""
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homepage = "https://github.com/PacificBiosciences/DALIGNER"
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git = "https://github.com/PacificBiosciences/DALIGNER.git"
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version('2017-08-05', commit='0fe5240d2cc6b55bf9e04465b700b76110749c9d')
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depends_on('gmake', type='build')
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depends_on('pacbio-dazz-db')
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def edit(self, spec, prefix):
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mkdir(prefix.bin)
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makefile = FileFilter('Makefile')
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makefile.filter('DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin)
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gmf = FileFilter('GNUmakefile')
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gmf.filter('rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin',
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'cp ${ALL} ' + prefix.bin)
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