dc8c8311c6
* wgsim: Create new package. * fix flake8 error. * wgsim: change cc compiler to spack_cc. * add missing dependency.
48 lines
2.0 KiB
Python
48 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Wgsim(Package):
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"""Wgsim is a small tool for simulating sequence reads from a reference
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genome.
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It is able to simulate diploid genomes with SNPs and insertion/deletion
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(INDEL) polymorphisms, and simulate reads with uniform substitution
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sequencing errors. It does not generate INDEL sequencing errors, but this
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can be partly compensated by simulating INDEL polymorphisms."""
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homepage = "https://github.com/lh3/wgsim"
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version('2011.10.17', git='https://github.com/lh3/wgsim.git', commit='a12da3375ff3b51a5594d4b6fa35591173ecc229')
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depends_on('zlib')
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def install(self, spec, prefix):
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cc = Executable(spack_cc)
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cc('-g', '-O2', '-Wall', '-o', 'wgsim', 'wgsim.c', '-lz', '-lm')
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install_tree(self.stage.source_path, prefix.bin)
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