dfe0752807
* py-pysam requires curl. * py-pysam conflicts with htslib@1.7. * Bump py-pysam versions. * Add more dependencies.
48 lines
1.9 KiB
Python
48 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyPysam(PythonPackage):
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"""A python module for reading, manipulating and writing genomic data
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sets."""
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homepage = "https://pypi.python.org/pypi/pysam"
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url = "https://github.com/pysam-developers/pysam/archive/v0.14.1.tar.gz"
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version('0.14.1', 'ad88fa5bbcc0fdf4a936734691d9c9d1')
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version('0.13', 'a9b502dd1a7e6403e35e6972211688a2')
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version('0.11.2.2', '56230cd5f55b503845915b76c22d620a')
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version('0.7.7', 'eaf9f37cbccc5e2708754d045909c1a0')
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depends_on('py-setuptools', type='build')
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depends_on('py-cython@0.21:', type='build')
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depends_on('curl')
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depends_on('bcftools')
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depends_on('htslib')
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depends_on('samtools')
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depends_on('htslib@:1.6', when='@:0.13')
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