9621b2bb3b
* fixed version numbers to python 2 and old biopython * changed shortbred pacakge to pypi, removed python 2 version * added package description * re-added shortbred package with depreciated flag * fixed style and removed unnecessary python dep (it can't build with python 2 anyway) * removed whitespace and readded the python2.7.9+ dep * fixed style
26 lines
946 B
Python
26 lines
946 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyShortbred(PythonPackage):
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"""ShortBRED is a system for profiling protein families of interest at
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very high specificity in shotgun meta'omic sequencing data."""
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homepage = "https://huttenhower.sph.harvard.edu/shortbred/"
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pypi = "shortbred/shortbred-0.9.5.tar.gz"
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version("0.9.5", sha256="a6ac09b858f14e2c0b8622b122ec91e5d02d32c12429cad66626d7ef26df10d5")
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depends_on("python@2.7.9:", type=("build", "run"))
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depends_on("py-setuptools", type="build")
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depends_on("py-biopython@1.65:", type="run")
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depends_on("blast-plus@2.2.28:", type="run")
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depends_on("usearch@6.0.307:", type="run")
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depends_on("muscle@3.8.31:", type="run")
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depends_on("cdhit@4.6:", type="run")
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