28 lines
1.1 KiB
Python
28 lines
1.1 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Pplacer(Package):
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"""Pplacer places query sequences on a fixed reference phylogenetic tree
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to maximize phylogenetic likelihood or posterior probability according
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to a reference alignment. Pplacer is designed to be fast, to give
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useful information about uncertainty, and to offer advanced
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visualization and downstream analysis.
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"""
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homepage = "http://matsen.fhcrc.org/pplacer/"
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url = "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip"
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version('1.1.alpha19', sha256='9131b45c35ddb927f866385f149cf64af5dffe724234cd4548c22303a992347d')
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def install(self, spec, prefix):
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install_tree('scripts', prefix.bin)
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force_remove(join_path(prefix.bin, 'setup.py'))
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install('guppy', prefix.bin)
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install('pplacer', prefix.bin)
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install('rppr', prefix.bin)
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