eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
38 lines
1.7 KiB
Python
38 lines
1.7 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RYapsa(RPackage):
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"""This package provides functions and routines useful in the analysis of
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somatic signatures (cf. L. Alexandrov et al., Nature 2013). In
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particular, functions to perform a signature analysis with known
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signatures (LCD = linear combination decomposition) and a signature
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analysis on stratified mutational catalogue (SMC = stratify mutational
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catalogue) are provided."""
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homepage = "http://bioconductor.org/packages/YAPSA/"
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git = "https://git.bioconductor.org/packages/YAPSA.git"
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version('1.2.0', commit='320809b69e470e30a777a383f8341f93064ec24d')
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depends_on('r-genomicranges', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-lsei', type=('build', 'run'))
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depends_on('r-somaticsignatures', type=('build', 'run'))
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depends_on('r-variantannotation', type=('build', 'run'))
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depends_on('r-genomeinfodb', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-gridextra', type=('build', 'run'))
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depends_on('r-corrplot', type=('build', 'run'))
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depends_on('r-dendextend', type=('build', 'run'))
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depends_on('r-getoptlong', type=('build', 'run'))
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depends_on('r-gtrellis', type=('build', 'run'))
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depends_on('r-pmcmr', type=('build', 'run'))
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depends_on('r-complexheatmap', type=('build', 'run'))
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depends_on('r-keggrest', type=('build', 'run'))
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depends_on('r@3.4.0:3.4.9', when='@1.2.0')
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