34 lines
1.5 KiB
Python
34 lines
1.5 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class SeqGen(MakefilePackage):
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"""Seq-Gen is a program that will simulate the evolution of nucleotide or
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amino acid sequences along a phylogeny.
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Seq-Gen is a program that will simulate the evolution of nucleotide or
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amino acid sequences along a phylogeny, using common models of the
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substitution process. A range of models of molecular evolution are implemented
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including the general reversible model. State frequencies and other parameters
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of the model may be given and site-specific rate heterogeneity may also be
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incorporated in a number of ways. Any number of trees may be read in and the
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program will produce any number of data sets for each tree. Thus large sets of
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replicate simulations can be easily created. It has been designed to be a
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general purpose simulator that incorporates most of the commonly used (and
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computationally tractable) models of molecular sequence evolution."""
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homepage = "http://tree.bio.ed.ac.uk/software/Seq-Gen/"
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url = "https://github.com/rambaut/Seq-Gen/archive/refs/tags/1.3.4.tar.gz"
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version("1.3.4", sha256="092ec2255ce656a02b2c3012c32443c7d8e38c692f165fb155b304ca030cbb59")
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build_directory = "source"
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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install("source/seq-gen", prefix.bin)
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