e31f80988c
What the user wants, the user etc.... Add info for STAR@2.4.2a. It's URL looks different, so added a URL for it. This broke the URL for the current version, so added a URL for it also (known bug). *Minimally* tested on CentOS 7.
45 lines
1.9 KiB
Python
45 lines
1.9 KiB
Python
##############################################################################
|
|
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
#
|
|
# This file is part of Spack.
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
# LLNL-CODE-647188
|
|
#
|
|
# For details, see https://github.com/llnl/spack
|
|
# Please also see the LICENSE file for our notice and the LGPL.
|
|
#
|
|
# This program is free software; you can redistribute it and/or modify
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
#
|
|
# This program is distributed in the hope that it will be useful, but
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
#
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
# License along with this program; if not, write to the Free Software
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
##############################################################################
|
|
from spack import *
|
|
|
|
|
|
class Star(Package):
|
|
"""STAR is an ultrafast universal RNA-seq aligner."""
|
|
|
|
homepage = "https://github.com/alexdobin/STAR"
|
|
url = "https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz"
|
|
|
|
version('2.5.3a', 'baf8d1b62a50482cfa13acb7652dc391',
|
|
url='https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz')
|
|
version('2.4.2a', '8b9345f2685a5ec30731e0868e86d506',
|
|
url='https://github.com/alexdobin/STAR/archive/STAR_2.4.2a.tar.gz')
|
|
|
|
def install(self, spec, prefix):
|
|
with working_dir('source'):
|
|
make('STAR', 'STARlong')
|
|
mkdirp(prefix.bin)
|
|
install('STAR', prefix.bin)
|
|
install('STARlong', prefix.bin)
|