37 lines
1.2 KiB
Python
37 lines
1.2 KiB
Python
# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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from os import symlink
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class BlastLegacy(Package):
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"""Legacy NCBI BLAST distribution -- no longer supported.
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Contains older programs including `blastall'"""
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homepage = "https://www.ncbi.nlm.nih.gov/"
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url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy.NOTSUPPORTED/2.2.26/ncbi.tar.gz"
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version('2.2.26', sha256='d8fffac25efc8ca894c707c840a4797a8a949ae6fd983d2f91c9972f788efb7d')
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depends_on('tcsh', type='build')
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def install(self, spec, prefix):
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filter_file('/bin/csh -f', '/usr/bin/env tcsh', 'make/ln-if-absent',
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string=True)
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symlink(self.stage.source_path, '../ncbi')
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tcsh = which('tcsh')
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with working_dir('..'):
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tcsh('./ncbi/make/makedis.csh')
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# depends on local data in the source tree
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install_path = join_path(prefix, 'usr/local/blast-legacy')
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mkdirp(install_path)
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install_tree('.', install_path)
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# symlink build output with binaries
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symlink(join_path(install_path, 'build'), prefix.bin)
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