a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
26 lines
1.0 KiB
Python
26 lines
1.0 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Shapeit(Package):
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"""SHAPEIT is a fast and accurate method for estimation of haplotypes (aka
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phasing) from genotype or sequencing data."""
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homepage = "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html"
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url = "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.v2.r837.GLIBCv2.12.Linux.dynamic.tgz"
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version('2.837', sha256='ec2ce728dd754452423ff5a8f7ed39c1c1218a11cedb93fab0c18428e3211874')
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def url_for_version(self, version):
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url = 'https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.v{0}.r{1}.GLIBCv2.12.Linux.dynamic.tgz'
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return url.format(version[0], version[1])
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('bin'):
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install('shapeit', prefix.bin)
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