eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
35 lines
1.0 KiB
Python
35 lines
1.0 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import os
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import glob
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class GenemarkEt(Package):
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"""Gene Prediction in Bacteria, archaea, Metagenomes and
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Metatranscriptomes."""
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homepage = "http://topaz.gatech.edu/GeneMark"
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version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3')
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depends_on('perl', type=('build', 'run'))
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def url_for_version(self, version):
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return "file://{0}/gm_et_linux_64.tar.gz".format(os.getcwd())
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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with working_dir('gmes_petap'):
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install_tree('lib', prefix.lib)
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files = glob.iglob('*')
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for file in files:
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if os.path.isfile(file):
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install(file, prefix.bin)
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def setup_environment(self, spack_env, run_env):
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run_env.prepend_path('PERL5LIB', prefix.lib)
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