eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
91 lines
3.1 KiB
Python
91 lines
3.1 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import glob
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class Raxml(Package):
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"""RAxML (Randomized Axelerated Maximum Likelihood) is a program for
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sequential and parallel Maximum Likelihood based inference of large
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phylogenetic trees."""
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homepage = "https://sco.h-its.org/exelixis/web/software/raxml"
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url = "https://github.com/stamatak/standard-RAxML/archive/v8.2.11.tar.gz"
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version('8.2.11', '6bd5c4e1f93003ccf13c9b59a5d080ab')
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variant('mpi', default=True, description='Enable MPI parallel support')
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variant('pthreads', default=False, description='Enable pthreads version')
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variant('sse', default=True, description='Enable SSE in order to substantially speed up execution')
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variant('avx', default=False, description='Enable AVX in order to substantially speed up execution')
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depends_on('mpi', when='+mpi')
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# Compiles with either GCC or ICC.
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conflicts('%cce')
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conflicts('%clang')
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conflicts('%nag')
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conflicts('%pgi')
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conflicts('%xl')
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conflicts('%xl_r')
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# can't build multiple binaries in parallel without things breaking
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parallel = False
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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files = glob.iglob("Makefile.*")
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for file in files:
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makefile = FileFilter(file)
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makefile.filter('gcc', spack_cc)
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if '+mpi' and '+avx' and '+pthreads' in spec:
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make('-f', 'Makefile.AVX.HYBRID.gcc')
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install('raxmlHPC-HYBRID-AVX', prefix.bin)
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if '+mpi' and '+sse' and '+pthreads' in spec:
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make('-f', 'Makefile.SSE3.HYBRID.gcc')
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install('raxmlHPC-HYBRID-SSE3', prefix.bin)
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if '+mpi' and '+pthreads' in spec:
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make('-f', 'Makefile.HYBRID.gcc')
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install('raxmlHPC-HYBRID', prefix.bin)
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if '+mpi' and '+avx' in spec:
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make('-f', 'Makefile.AVX.MPI.gcc')
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install('raxmlHPC-MPI-AVX', prefix.bin)
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if '+mpi' and '+sse' in spec:
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make('-f', 'Makefile.SSE3.MPI.gcc')
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install('raxmlHPC-MPI-SSE3', prefix.bin)
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if '+mpi' in spec:
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make('-f', 'Makefile.MPI.gcc')
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install('raxmlHPC-MPI', prefix.bin)
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if '+pthreads' and '+avx' in spec:
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make('-f', 'Makefile.AVX.PTHREADS.gcc')
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install('raxmlHPC-PTHREADS-AVX', prefix.bin)
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if '+pthreads' and '+sse' in spec:
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make('-f', 'Makefile.SSE3.PTHREADS.gcc')
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install('raxmlHPC-PTHREADS-SSE3', prefix.bin)
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if '+pthreads' in spec:
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make('-f', 'Makefile.PTHREADS.gcc')
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install('raxmlHPC-PTHREADS', prefix.bin)
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if '+sse' in spec:
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make('-f', 'Makefile.SSE3.gcc')
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install('raxmlHPC-SSE3', prefix.bin)
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if '+avx' in spec:
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make('-f', 'Makefile.AVX.gcc')
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install('raxmlHPC-AVX', prefix.bin)
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make('-f', 'Makefile.gcc')
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install('raxmlHPC', prefix.bin)
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