62 lines
2.2 KiB
Python
62 lines
2.2 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import platform
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from spack.package import *
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# If you need to add a new version, please be aware that:
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# - versions in the following dict are automatically added to the package
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# - version tuple must be in the form (checksum, url)
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# - checksum must be sha256
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# - package key must be in the form '{os}-{arch}' where 'os' is in the
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# format returned by platform.system() and 'arch' by platform.machine()
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# - the newest non-cuda version should be set as 'preferred_ver'
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# - a cuda dependency must be set for each new cuda version
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_versions = {
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"6.1.7-cuda": {
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"Linux-x86_64": (
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"c3dd8f8b7567061a155d1921586dd95540410b35b2ccb8a33a463d9db8642711",
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"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linux64.tar.gz",
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),
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"Linux-aarch64": (
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"e821fe85b538e1a5d38c17c8fc7497f6fad200ff9fdf0c98921b4d7b1d490914",
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"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linuxaarch64_cuda10.tar.gz",
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),
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},
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"6.1.7": {
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"Linux-x86_64": (
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"4540441ca5393d76f05485f38cdba2dc0b5785af31d77006bdc3664b3f2644cb",
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"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy-cpu_6.1.7_linux64.tar.gz",
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)
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},
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}
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class OntGuppy(Package):
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"""Guppy: local accelerated basecalling for Nanopore data"""
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homepage = "https://community.nanoporetech.com/downloads/guppy/release_notes"
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preferred_ver = "6.1.7"
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preferred_defined = False
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for ver, packages in _versions.items():
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key = "{0}-{1}".format(platform.system(), platform.machine())
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pkg = packages.get(key)
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if pkg:
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is_preferred = not preferred_defined and (ver == preferred_ver)
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if is_preferred:
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preferred_defined = True
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version(ver, sha256=pkg[0], url=pkg[1], preferred=is_preferred)
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depends_on("cuda@11.0.0:", when="@6.1.7-cuda", type="run")
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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install_tree("data", prefix.data)
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install_tree("lib", prefix.lib)
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