e53bc780e4
There hasn't been a release in almost a decade, and build failures with GCC 14 were reported. I don't think it makes sense to patch it, since the project moved over to `util-linux`, and Spack's default provider is that package. Better to just get rid of it in the next Spack release.
42 lines
1.4 KiB
Python
42 lines
1.4 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Kentutils(MakefilePackage):
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"""Jim Kent command line bioinformatic utilities"""
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homepage = "https://genome.cse.ucsc.edu/"
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url = "https://hgdownload.cse.ucsc.edu/admin/exe/userApps.archive/userApps.v453.src.tgz"
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version("459", sha256="0b6e89a183e6385c713cf010a7aeead9da6626d8d2f78c363a4f1bc56ccccebb")
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# The above archive only goes back to v305. v302 is left for now but deprecated. Suggest
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# this is dropped on next update (v302 is from 2014!) and the `requires()` removed.
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version(
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"302.1",
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commit="d8376c5d52a161f2267346ed3dc94b5dce74c2f9",
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git="https://github.com/ENCODE-DCC/kentUtils.git",
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deprecated=True,
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)
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depends_on("libpng")
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depends_on("openssl")
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depends_on("uuid")
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depends_on("mariadb")
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depends_on("zlib-api")
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depends_on("freetype")
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depends_on("libiconv")
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requires("%gcc", when="@302.1")
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def flag_handler(self, name, flags):
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if name == "ldflags":
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flags.append(f'{self.spec["libiconv"].libs.ld_flags}')
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return (flags, None, None)
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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