a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
34 lines
1.2 KiB
Python
34 lines
1.2 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Sniffles(CMakePackage):
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"""Structural variation caller using third generation sequencing."""
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homepage = "https://github.com/fritzsedlazeck/Sniffles/wiki"
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url = "https://github.com/fritzsedlazeck/Sniffles/archive/v1.0.5.tar.gz"
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version('1.0.7', sha256='03fa703873bdf9c32055c584448e1eece45f94b4bc68e60c9624cf3841e6d8a9')
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version('1.0.5', sha256='386c6536bdaa4637579e235bac48444c08297337c490652d1e165accd34b258f')
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depends_on('zlib', type='link')
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depends_on('bamtools', type='link')
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patch('unused_libs.patch')
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def cmake_args(self):
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i = self.spec['bamtools'].prefix.include.bamtools
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return ['-DCMAKE_CXX_FLAGS=-I{0}'.format(i)]
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# the build process doesn't actually install anything, do it by hand
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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src = "bin/sniffles-core-{0}".format(spec.version.dotted)
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binaries = ['sniffles', 'sniffles-debug']
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for b in binaries:
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install(join_path(src, b), join_path(prefix.bin, b))
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