27 lines
926 B
Python
27 lines
926 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack import *
|
|
|
|
|
|
class Scallop(AutotoolsPackage):
|
|
"""Scallop is a reference-based transcriptome assembler for RNA-seq"""
|
|
|
|
homepage = "https://github.com/Kingsford-Group/scallop"
|
|
url = "https://github.com/Kingsford-Group/scallop/releases/download/v0.10.3/scallop-0.10.3.tar.gz"
|
|
|
|
version('0.10.3', sha256='04eb3ab27ed8c7ae38e1780d6b2af16b6a2c01807ffafd59e819d33bfeff58a0')
|
|
|
|
depends_on('clp')
|
|
depends_on('boost')
|
|
depends_on('htslib@1.5:')
|
|
|
|
def configure_args(self):
|
|
return [
|
|
'--with-clp={0}'.format(self.spec['clp'].prefix),
|
|
'--with-htslib={0}'.format(self.spec['htslib'].prefix),
|
|
'--with-boost={0}'.format(self.spec['boost'].prefix),
|
|
]
|