a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
40 lines
1.3 KiB
Python
40 lines
1.3 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Phast(MakefilePackage):
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"""PHAST is a freely available software package for comparative and
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evolutionary genomics."""
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homepage = "http://compgen.cshl.edu/phast/index.php"
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url = "https://github.com/CshlSiepelLab/phast/archive/v1.4.tar.gz"
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version('1.4', sha256='287c77599c51256a3adbd62ed217cb6d6a547fcec2c29262e9d61fa32ed92b99')
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# phast cannot build with clapack using external blas
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depends_on('clapack~external-blas')
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build_directory = 'src'
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@property
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def build_targets(self):
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targets = ['CLAPACKPATH={0}'.format(self.spec['clapack'].prefix)]
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return targets
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def edit(self, spec, prefix):
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with working_dir(self.build_directory):
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filter_file(r'\$\{PWD\}',
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'$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
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'make-include.mk')
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filter_file(r'\$\{PWD\}',
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'$(dir $(realpath $(firstword $(MAKEFILE_LIST))))',
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'Makefile')
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def install(self, spec, prefix):
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install_tree('bin', prefix.bin)
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install_tree('lib', prefix.lib)
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