28 lines
940 B
Python
28 lines
940 B
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
|
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
|
#
|
|
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
|
|
|
from spack.package import *
|
|
|
|
|
|
class AllpathsLg(AutotoolsPackage):
|
|
"""ALLPATHS-LG is our original short read assembler and it works on both
|
|
small and large (mammalian size) genomes."""
|
|
|
|
homepage = "https://www.broadinstitute.org/software/allpaths-lg/blog/"
|
|
url = "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz"
|
|
|
|
version("52488", sha256="035b49cb21b871a6b111976757d7aee9c2513dd51af04678f33375e620998542")
|
|
|
|
# compiles with gcc 4.7.0 to 4.9.4)
|
|
conflicts("%gcc@:4.6.4,5.1.0:")
|
|
conflicts("%cce")
|
|
conflicts("%apple-clang")
|
|
conflicts("%clang")
|
|
conflicts("%intel")
|
|
conflicts("%nag")
|
|
conflicts("%pgi")
|
|
conflicts("%xl")
|
|
conflicts("%xl_r")
|