33 lines
1.1 KiB
Python
33 lines
1.1 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Tabix(MakefilePackage):
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"""Generic indexer for TAB-delimited genome position files"""
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homepage = "https://github.com/samtools/tabix"
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git = "https://github.com/samtools/tabix.git"
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version("2013-12-16", commit="1ae158ac79b459f5feeed7490c67519b14ce9f35")
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depends_on("perl", type=("build", "run"))
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depends_on("python", type=("build", "run"))
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depends_on("zlib-api", type="link")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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mkdirp(prefix.share.man.man1)
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install("tabix", prefix.bin)
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install("bgzip", prefix.bin)
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install("tabix.py", prefix.bin)
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install("tabix.1", prefix.share.man.man1)
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install("tabix.tex", prefix.share)
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install("TabixReader.java", prefix.bin)
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install("libtabix.a", prefix.lib)
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install_tree("perl", prefix.perl)
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install_tree("python", prefix.python)
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