ea8c05b263
* Add package for Sniffles * Wire up a manual install step The cmake infra doesn't install anything, so do it by hand. The binaries land in a location that embeds the version...
43 lines
1.9 KiB
Python
43 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Sniffles(CMakePackage):
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"""Structural variation caller using third generation sequencing."""
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homepage = "https://github.com/fritzsedlazeck/Sniffles/wiki"
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url = "https://github.com/fritzsedlazeck/Sniffles/archive/v1.0.5.tar.gz"
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version('1.0.5', 'c2f2350d00418ba4d82c074e7f0b1832')
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# the build process doesn't actually install anything, do it by hand
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def install(self, spec, prefix):
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mkdir(prefix.bin)
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src = "bin/sniffles-core-{0}".format(spec.version.dotted)
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binaries = ['sniffles', 'sniffles-debug']
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for b in binaries:
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install(join_path(src, b), join_path(prefix.bin, b))
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