41 lines
1.9 KiB
Python
41 lines
1.9 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RPcamethods(RPackage):
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"""A collection of PCA methods.
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Provides Bayesian PCA, Probabilistic PCA, Nipals PCA, Inverse Non-Linear
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PCA and the conventional SVD PCA. A cluster based method for missing
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value estimation is included for comparison. BPCA, PPCA and NipalsPCA
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may be used to perform PCA on incomplete data as well as for accurate
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missing value estimation. A set of methods for printing and plotting the
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results is also provided. All PCA methods make use of the same data
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structure (pcaRes) to provide a common interface to the PCA results.
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Initiated at the Max-Planck Institute for Molecular Plant Physiology,
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Golm, Germany."""
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bioc = "pcaMethods"
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license("GPL-2.0-or-later")
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version("1.92.0", commit="ecbbc5b96b8fa79342611af8f798dd43c36d6699")
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version("1.90.0", commit="52474bc6d125122e89834328a1a780988349756f")
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version("1.88.0", commit="02fb58d6fe35579b86fb2ebd2eaf92e6b53444d2")
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version("1.86.0", commit="9419cfa18c18dfbd1e1194127fd120ab456c3657")
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version("1.82.0", commit="d500b3363308f1f8ca70625c5cd10cce59b27641")
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version("1.76.0", commit="5db995330ced37dfd5ddad6ad1d90b4815d3127a")
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version("1.74.0", commit="1b8f0a5cdfe3664119d0d7e926a2e0fe7320133c")
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version("1.72.0", commit="1bb8c7d056645e62ee5179f6bb30b6594ebf3bfd")
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version("1.70.0", commit="3368fad48ea930775505fd26e4179d7714d633d8")
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version("1.68.0", commit="c8d7c93dcaf7ef728f3d089ae5d55771b320bdab")
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depends_on("r-biobase", type=("build", "run"))
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depends_on("r-biocgenerics", type=("build", "run"))
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depends_on("r-rcpp@0.11.3:", type=("build", "run"))
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depends_on("r-mass", type=("build", "run"))
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