52 lines
2.0 KiB
Python
52 lines
2.0 KiB
Python
##############################################################################
|
|
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
|
|
# Produced at the Lawrence Livermore National Laboratory.
|
|
#
|
|
# This file is part of Spack.
|
|
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
|
# LLNL-CODE-647188
|
|
#
|
|
# For details, see https://github.com/spack/spack
|
|
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
|
#
|
|
# This program is free software; you can redistribute it and/or modify
|
|
# it under the terms of the GNU Lesser General Public License (as
|
|
# published by the Free Software Foundation) version 2.1, February 1999.
|
|
#
|
|
# This program is distributed in the hope that it will be useful, but
|
|
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
|
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
|
# conditions of the GNU Lesser General Public License for more details.
|
|
#
|
|
# You should have received a copy of the GNU Lesser General Public
|
|
# License along with this program; if not, write to the Free Software
|
|
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
##############################################################################
|
|
from spack import *
|
|
|
|
|
|
class Mpiblast(AutotoolsPackage):
|
|
"""mpiBLAST is a freely available, open-source, parallel implementation of
|
|
NCBI BLAST"""
|
|
|
|
homepage = "http://www.mpiblast.org/"
|
|
url = "http://www.mpiblast.org/downloads/files/mpiBLAST-1.6.0.tgz"
|
|
|
|
version('1.6.0', '707105ccd56825db776b50bfd81cecd5')
|
|
|
|
patch('mpiBLAST-1.6.0-patch-110806')
|
|
|
|
depends_on('mpi')
|
|
|
|
def configure_args(self):
|
|
args = ['--with-mpi=%s' % self.spec['mpi'].prefix]
|
|
return args
|
|
|
|
def build(self, spec, prefix):
|
|
make('ncbi')
|
|
make()
|
|
|
|
def setup_environment(self, spack_env, run_env):
|
|
spack_env.set('ac_cv_path_CC', self.spec['mpi'].mpicc)
|
|
spack_env.set('ac_cv_path_CXX', self.spec['mpi'].mpicxx)
|