46 lines
1.9 KiB
Python
46 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Transabyss(Package):
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"""De novo assembly of RNAseq data using ABySS"""
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homepage = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
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url = "http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/1.5.5/transabyss-1.5.5.zip"
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version('1.5.5', '9ebe0394243006f167135cac4df9bee6')
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depends_on('abyss@1.5.2')
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depends_on('python@2.7.6:', type=('build', 'run'))
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depends_on('py-igraph@0.7.0:', type=('build', 'run'))
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depends_on('blat')
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def install(self, spec, prefix):
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install('transabyss', prefix)
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install('transabyss-merge', prefix)
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install_tree('bin', prefix.bin)
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install_tree('utilities', prefix.utilities)
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