53 lines
2.1 KiB
Python
53 lines
2.1 KiB
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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import inspect
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class PerlBioPerl(PerlPackage):
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"""Functional access to BioPerl for people who don't know objects"""
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homepage = "http://search.cpan.org/~cjfields/BioPerl-1.007002/Bio/Perl.pm"
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url = "http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007002.tar.gz"
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version('1.007002', 'a912c92b56d009198f1786b4cf560d5c')
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depends_on('perl-module-build', type='build')
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depends_on('perl-uri-escape', type=('build', 'run'))
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depends_on('perl-io-string', type=('build', 'run'))
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depends_on('perl-data-stag', type=('build', 'run'))
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depends_on('perl-test-most', type=('build', 'run'))
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def configure(self, spec, prefix):
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# Overriding default configure method in order to cater to interactive
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# Build.pl
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self.build_method = 'Build.PL'
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self.build_executable = Executable(
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join_path(self.stage.source_path, 'Build'))
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# Config questions consist of:
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# Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store
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# live database tests? y/n [n]
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#
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# Install [a]ll BioPerl scripts, [n]one, or choose groups
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# [i]nteractively? [a]
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#
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# Do you want to run tests that require connection to servers across
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# the internet (likely to cause some failures)? y/n [n]
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#
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# Eventually, someone can add capability for the other options, but
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# the current answers are the most practical for a spack install.
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config_answers = ['n\n', 'a\n', 'n\n']
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config_answers_filename = 'spack-config.in'
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with open(config_answers_filename, 'w') as f:
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f.writelines(config_answers)
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with open(config_answers_filename, 'r') as f:
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inspect.getmodule(self).perl('Build.PL', '--install_base=%s' %
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self.prefix, input=f)
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