eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
35 lines
1.1 KiB
Python
35 lines
1.1 KiB
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Bowtie(MakefilePackage):
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"""Bowtie is an ultrafast, memory-efficient short read aligner
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for short DNA sequences (reads) from next-gen sequencers."""
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homepage = "https://sourceforge.net/projects/bowtie-bio/"
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url = "https://downloads.sourceforge.net/project/bowtie-bio/bowtie/1.2.0/bowtie-1.2-source.zip"
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version('1.2', '6d97f0ea1a65af11d17cc270cfac4af9')
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variant('tbb', default=False, description='Use Intel thread building block')
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depends_on('tbb', when='+tbb')
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def edit(self, spec, prefix):
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makefile = FileFilter('Makefile')
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makefile.filter('CC = .*', 'CC = ' + env['CC'])
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makefile.filter('CXX = .*', 'CPP = ' + env['CXX'])
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def build(self, spec, prefix):
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if '+tbb' in spec:
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make()
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else:
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make('NO_TBB=1')
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def install(self, spec, prefix):
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make('prefix={0}'.format(self.prefix), 'install')
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