eea786f4e8
- remove the old LGPL license headers from all files in Spack - add SPDX headers to all files - core and most packages are (Apache-2.0 OR MIT) - a very small number of remaining packages are LGPL-2.1-only
31 lines
1002 B
Python
31 lines
1002 B
Python
# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Vegas2(Package):
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""""VEGAS2 is an extension that uses 1,000 Genomes data to model SNP
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correlations across the autosomes and chromosome X"""
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homepage = "https://vegas2.qimrberghofer.edu.au/"
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url = "https://vegas2.qimrberghofer.edu.au/vegas2v2"
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version('2', '815d80b86e9e294f99332bb5181e897a', expand=False)
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depends_on('perl', type='run')
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depends_on('r', type='run')
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depends_on('plink')
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depends_on('r-mvtnorm', type='run')
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depends_on('r-corpcor', type='run')
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def url_for_version(self, version):
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url = 'https://vegas2.qimrberghofer.edu.au/vegas2v{0}'
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return url.format(version)
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('vegas2v{0}'.format(self.version), prefix.bin)
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