46 lines
2.0 KiB
Python
46 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RdpClassifier(Package):
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"""The RDP Classifier is a naive Bayesian classifier that can rapidly and
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accurately provides taxonomic assignments from domain to genus, with
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confidence estimates for each assignment. """
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homepage = "http://rdp.cme.msu.edu/"
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url = "https://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.12.zip"
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version('2.12', '7fdfa33512629810f0ff06b905642ddd')
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depends_on('java', type=('build', 'run'))
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install(join_path('dist', 'classifier.jar'), prefix.bin)
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install_tree(join_path('dist', 'lib'), prefix.bin.lib)
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install(join_path('lib', 'junit-4.8.2.jar'), prefix.bin.lib)
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install_tree('src', prefix.src)
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