7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
99 lines
3.8 KiB
Python
99 lines
3.8 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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class Revbayes(CMakePackage):
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"""Bayesian phylogenetic inference using probabilistic graphical models
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and an interpreted language."""
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homepage = "https://revbayes.github.io"
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url = "https://github.com/revbayes/revbayes/archive/1.1.0.tar.gz"
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git = "https://github.com/revbayes/revbayes.git"
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license("GPL-3.0-only")
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version("develop", branch="development")
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version(
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"1.2.2",
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sha256="339f89169cc9320212c3c64d0557b66f416ec9ae25d45e21a4e9a1cafef6e423",
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url="https://github.com/revbayes/revbayes/archive/refs/tags/v1.2.2.tar.gz",
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)
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version("1.1.1", sha256="d61293fceac817d8203ed1e828661d76c73fa16bf04458a50a37057e99fd40c0")
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version("1.1.0", sha256="a9f35178d8289d0dd32c9d936f6384f260e8e81e7b80a5155169064a24666012")
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version("1.0.13", sha256="e85e2e1fe182fe9f504900150d936a06d252a362c591b9d3d8272dd085aa85d9")
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version("1.0.12", sha256="80c926bb6b37288d02e36e07b44e4663841cd1fe541e2cc0b0e44c89ca929759")
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version("1.0.11", sha256="03052194baa220dde7e622a739f09f34393f67ea00a0b163b409d313d7fc7c02")
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version("1.0.10", sha256="6a3cf303e7224b0b32637bd8e2c3c2cf2621f5dbe599cd74ce4b0c215d0fcd2d")
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depends_on("c", type="build") # generated
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depends_on("cxx", type="build") # generated
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variant("mpi", default=True, description="Enable MPI parallel support")
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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depends_on(Boost.with_default_variants)
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depends_on("mpi", when="+mpi")
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conflicts("%gcc@7.1.0:", when="@:1.0.12")
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def url_for_version(self, version):
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if version > Version("1.0.13"):
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return "https://github.com/revbayes/revbayes/archive/{0}.tar.gz".format(version)
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else:
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return "https://github.com/revbayes/revbayes.archive/archive/v{0}.tar.gz".format(
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version
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)
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@property
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def root_cmakelists_dir(self):
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if self.spec.version > Version("1.0.13"):
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return "src"
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else:
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return "projects/cmake/build"
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@when("@1.1.0:")
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def cmake_args(self):
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args = []
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if "+mpi" in self.spec:
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args.extend([self.define("MPI", "ON"), self.define("RB_EXEC_NAME", "rb-mpi")])
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return args
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@run_before("cmake")
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def regenerate(self):
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with working_dir(join_path("projects", "cmake")):
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mkdirp("build")
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if self.spec.version > Version("1.0.13"):
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generate_version = Executable("./generate_version_number.sh")
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generate_version()
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dest = join_path("..", "..", "src", "revlanguage", "utils")
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install("GitVersion.cpp", dest)
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else:
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edit = FileFilter("regenerate.sh")
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edit.filter('boost="true"', 'boost="false"')
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if "+mpi" in self.spec:
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edit.filter('mpi="false"', 'mpi="true"')
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regenerate = Executable("./regenerate.sh")
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regenerate()
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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if "+mpi" in spec:
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install_path = join_path(self.build_directory, "..", "rb-mpi")
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install(install_path, prefix.bin)
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else:
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install_path = join_path(self.build_directory, "..", "rb")
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install(install_path, prefix.bin)
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@when("@1.0.12:1.0.13")
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install_path = join_path(self.build_directory, "..", "rb")
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install(install_path, prefix.bin)
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