50 lines
2.0 KiB
Python
50 lines
2.0 KiB
Python
##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Infernal(AutotoolsPackage):
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"""Infernal (INFERence of RNA ALignment) is for searching DNA sequence
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databases for RNA structure and sequence similarities. It is an
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implementation of a special case of profile stochastic context-free
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grammars called covariance models (CMs)."""
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homepage = "http://eddylab.org/infernal/"
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url = "http://eddylab.org/infernal/infernal-1.1.2.tar.gz"
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version('1.1.2', 'a73e6bbab0c4b79af2cc4c0aabb8accc')
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variant('mpi', default=False, description='Enable MPI parallel support')
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depends_on('mpi', when='+mpi')
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def configure_args(self):
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args = []
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if '+mpi' in self.spec:
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args.append('--enable-mpi')
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else:
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args.append('--disable-mpi')
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return args
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