28 lines
967 B
Python
28 lines
967 B
Python
# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class FastqScreen(Package):
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"""FastQ Screen allows you to screen a library of sequences in FastQ format
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against a set of sequence databases so you can see if the composition of
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the library matches with what you expect."""
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homepage = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/"
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url = "https://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/fastq_screen_v0.11.2.tar.gz"
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version('0.11.2', 'ef79f16ee553aaa0ab2fc14ea11e5473')
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depends_on('perl', type='run')
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depends_on('perl-gd-graph', type='run')
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depends_on('bowtie')
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depends_on('bowtie2')
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depends_on('bwa')
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depends_on('samtools')
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def install(self, spec, prefix):
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install_tree('.', prefix.bin)
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