30 lines
972 B
Python
30 lines
972 B
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Kaiju(MakefilePackage):
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"""Kaiju is a program for the taxonomic classification
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of high-throughput sequencing reads."""
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homepage = "https://github.com/bioinformatics-centre/kaiju"
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url = "https://github.com/bioinformatics-centre/kaiju/archive/v1.6.2.zip"
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version("1.6.2", sha256="2685fed7e27ddeb26530fd60a4b388f2d5f3e29aaa79f8e2e6abcbac64075db8")
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build_directory = "src"
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depends_on("perl-io-compress", type="run")
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depends_on("py-htseq", type="run")
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def edit(self, spec, prefix):
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# Replace ftp:// with https://
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makedb = FileFilter("util/makeDB.sh")
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makedb.filter("ftp://", "https://", string=True)
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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