32 lines
1.1 KiB
Python
32 lines
1.1 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Prokka(Package):
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"""Prokka is a software tool to annotate bacterial, archaeal and viral
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genomes quickly and produce standards-compliant output files."""
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homepage = "https://github.com/tseemann/prokka"
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url = "https://github.com/tseemann/prokka/archive/v1.14.5.tar.gz"
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version("1.14.6", sha256="f730b5400ea9e507bfe6c5f3d22ce61960a897195c11571c2e1308ce2533faf8")
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depends_on("perl", type="run")
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depends_on("perl-bioperl", type="run")
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depends_on("perl-xml-simple", type="run")
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depends_on("perl-bio-searchio-hmmer", type="run")
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depends_on("hmmer", type="run")
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depends_on("blast-plus", type="run")
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depends_on("prodigal", type="run")
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depends_on("tbl2asn", type="run")
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def install(self, spec, prefix):
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install_tree("bin", prefix.bin)
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install_tree("binaries", prefix.binaries)
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install_tree("db", prefix.db)
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install_tree("doc", prefix.doc)
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