52 lines
2.4 KiB
Python
52 lines
2.4 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RIranges(RPackage):
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"""Provides efficient low-level and highly
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reusable S4 classes for storing,
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manipulating and aggregating over annotated ranges of
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integers. Implements an
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algebra of range operations, including efficient
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algorithms for finding overlaps
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and nearest neighbors. Defines efficient list-like
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classes for storing, transforming
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and aggregating large grouped data,
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i.e., collections of atomic vectors and DataFrames."""
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homepage = "https://www.bioconductor.org/packages/IRanges/"
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url = "https://git.bioconductor.org/packages/IRanges"
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list_url = homepage
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version('2.12.0', git='https://git.bioconductor.org/packages/IRanges', commit='1b1748655a8529ba87ad0f223f035ef0c08e7fcd')
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version('2.10.5', git='https://git.bioconductor.org/packages/IRanges', commit='b00d1d5025e3c480d17c13100f0da5a0132b1614')
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depends_on('r-biocgenerics@0.21.1:', type=('build', 'run'), when='@2.10.5')
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depends_on('r-biocgenerics@0.23.3:', type=('build', 'run'), when='@2.12.0')
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depends_on('r-s4vectors@0.13.17:', type=('build', 'run'), when='@2.10.5')
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depends_on('r-s4vectors@0.15.5:', type=('build', 'run'), when='@2.12.0')
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depends_on('r@3.4.0:3.4.9', when='@2.10.5:')
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