43 lines
2.0 KiB
Python
43 lines
2.0 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class RGlimma(RPackage):
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"""Interactive HTML graphics.
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This package generates interactive visualisations for analysis of RNA-
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sequencing data using output from limma, edgeR or DESeq2 packages in an
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HTML page. The interactions are built on top of the popular static
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representations of analysis results in order to provide additional
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information."""
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bioc = "Glimma"
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version("2.8.0", commit="09cec82e9af9c6775192570f8c28f050c0df08ac")
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version("2.6.0", commit="23220d9b90476059aab035b5de11b7ce04b331c8")
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version("2.4.0", commit="caa270e44ec6994035d2e915c0f68a14ccbb58db")
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version("2.0.0", commit="40bebaa79e8c87c5686cff7285def4461c11bca9")
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version("1.12.0", commit="d02174239fe0b47983d6947ed42a1a53b24caecb")
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version("1.10.1", commit="ffc7abc36190396598fadec5e9c653441e47be72")
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version("1.8.2", commit="7696aca2c023f74d244b6c908a6e7ba52bfcb34b")
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version("1.6.0", commit="57572996982806aa7ac155eedb97b03249979610")
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version("1.4.0", commit="c613c5334ed7868f36d5716b97fdb6234fb291f8")
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depends_on("r@3.3.0:", type=("build", "run"))
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depends_on("r@3.4.0:", type=("build", "run"), when="@1.6.0:")
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depends_on("r@4.0.0:", type=("build", "run"), when="@2.0.0:")
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depends_on("r-htmlwidgets", type=("build", "run"), when="@2.0.0:")
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depends_on("r-edger", type=("build", "run"))
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depends_on("r-deseq2", type=("build", "run"), when="@2.0.0:")
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depends_on("r-limma", type=("build", "run"), when="@2.0.0:")
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depends_on("r-summarizedexperiment", type=("build", "run"), when="@2.0.0:")
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depends_on("r-jsonlite", type=("build", "run"))
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depends_on("r-s4vectors", type=("build", "run"))
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depends_on("r-biobase", type=("build", "run"), when="@1.4.0:1.6.0")
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depends_on("r-scater", type=("build", "run"), when="@1.4.0")
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