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Nichols A. Romero f4ee07527c QMCPACK Spack Package Update (Summer 2018) (#9008) 
* QMCPACK now supports QE 6.3. Dropped QE 5.3 due to incompatibilities.

* QMCPACK general clean-up of depends_on.

* Add QMCPACK 3.5.0

* More robust support of MKL detection in QMCPACK.
2018-08-18 11:26:17 -05:00
..
abinit
abyss
accfft Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ack
activeharmony
adept-utils
adios Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
adios2 adios2: add 2.2.0 (#8871) 2018-08-02 11:16:17 -05:00
adlbx
adol-c Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aegean
albany Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
albert
alglib install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
allinea-forge
allinea-reports
allpaths-lg
alquimia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
alsa-lib
amg Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
amg2013 Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
amp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ampliconnoise
amrex xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932) 2018-08-13 22:17:17 -07:00
amrvis Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
andi
angsd
ant
antlr
ants
ape
apex
apple-libunwind apple-libunwind: new package, provides unwind 2018-08-06 22:01:50 -07:00
applewmproto
appres
apr
apr-util
aragorn
archer
argp-standalone
argtable
arlecore install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
armadillo
arpack-ng arpack: add version 3.6.2 (#8881) 2018-08-03 09:53:44 -05:00
arrow Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
ascent Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
asciidoc
aspa Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aspcud
aspect Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
aspell views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
aspell6-de Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-en Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspell6-es Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
aspera-cli aspera-cli: a new package. (#8715) 2018-07-16 13:53:23 -05:00
assimp Further improvements to version parsing 2018-07-25 23:10:10 -07:00
astra
astral
astyle
at-spi2-atk Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
at-spi2-core Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
atk Packages/atk (#9002) 2018-08-16 18:11:52 -05:00
atlas
atom-dft install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
atompaw
atop
augustus Augustus updated to version 3.3.1 (#8588) 2018-07-22 17:11:37 -05:00
autoconf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
autodock-vina install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
autogen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
automaded
automake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
axel
axl ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
bamtools
bamutil
barrnap
bash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bash-completion Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
bats
bazel
bbcp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bbmap
bc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bcftools
bcl2fastq2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bdftopcf
bdw-gc
bear
beast1 beast1: add libbeagle support (#8525) 2018-07-22 17:17:03 -05:00
beast2
bedops
bedtools2
beforelight
benchmark Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils binutils@2.31.1: new version (#9007) 2018-08-16 18:10:08 -05:00
bioawk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
biopieces install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
bismark
bison Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
bitmap
blasr blasr: new package (#8367) 2018-07-07 10:05:57 -05:00
blasr-libcpp
blast-plus
blat
blaze
blis Add blis package (#8925) 2018-08-16 11:26:43 -05:00
bliss
blitz
bmake
bml Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bohrium Update bohrium version (#9020) 2018-08-18 09:22:16 -05:00
bookleaf-cpp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
boost boost: add 1.68.0 (#8931) 2018-08-09 17:08:20 -05:00
boostmplcartesianproduct
bowtie
bowtie2
boxlib Correcting position independent code setting for boxlib and amrex. (#8537) 2018-06-21 16:37:10 -05:00
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson All git URLs end in .git 2018-07-25 23:10:10 -07:00
breakdancer Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
breseq
brigand Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
bsseeker2
bucky
bumpversion
busco Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
butter
bwa Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
bwtool New packages: libbeato bwtool. (#8681) 2018-07-11 10:33:44 -05:00
byobu byobu: update package (#8628) 2018-07-02 15:17:39 -05:00
bzip2 Change bzip2 download URL (#8976) 2018-08-14 10:46:15 -06:00
c-blosc
c-lime
caffe
cairo
cairomm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
caliper caliper: update to use unwind virtual package 2018-08-06 22:01:50 -07:00
callpath
camellia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
candle-benchmarks
cantera
canu
cap3
cares Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cask
casper install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
catalyst
catch
cbench
cblas CBLAS: Don't hardcode BLAS library name (#9017) 2018-08-18 11:19:24 -05:00
cbtf Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cbtf-argonavis libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
cbtf-argonavis-gui qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
cbtf-krell libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
cbtf-lanl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ccache
cctools
cdbfasta Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cdd
cddlib
cdhit
cdo
ceed Balay/petsc remove boost dependency (#8508) 2018-06-24 10:52:14 -05:00
cereal
ceres-solver votca*: update dependencies (#8757) 2018-07-19 11:06:16 -05:00
cfitsio Add CFITSIO 3.450 (#8602) 2018-06-28 11:28:22 -05:00
cgal
cgm
cgns
charliecloud add Charliecloud 0.9.1 (#8902) 2018-08-06 17:43:00 -05:00
charm install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
check
chlorop install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
chombo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cistem
cityhash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clamr Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clapack Fix missing makefile variable in clapack package (#9016) 2018-08-18 11:19:40 -05:00
cleaveland4
cleverleaf Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
clfft
clhep
clingo
cloc
cloog
cloverleaf
cloverleaf3d
clustalo
clustalw
cmake Add new versions for cmake. (#8955) 2018-08-11 08:38:20 -05:00
cmocka
cmor
cnmem Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cnpy Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cntk Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cntk1bitsgd Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
codar-cheetah install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
coevp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cohmm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
coinhsl
colm
colordiff
comd install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
compiz
compositeproto
conduit Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
constype
converge
coreutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
corset
cosmomc
cosp2 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cp2k install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cppad Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
cppcheck install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cpprestsdk
cppunit
cppzmq Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cpu-features Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cpuinfo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cram
cryptopp
cscope
csdp
ctffind
cub
cube
cubelib scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cubew scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
cuda
cuda-memtest Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
cudnn install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
cufflinks
cups
curl
cvs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
czmq flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
dakota
daligner
damageproto
damselfly tests: add checks and tests for consistent version() arguments 2018-07-25 23:10:10 -07:00
darshan-runtime
darshan-util
dash
datamash Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
dataspaces Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
davix
dbus Add version 1.12.8 to dbus (#8949) 2018-08-11 09:21:20 -05:00
dealii Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
dealii-parameter-gui Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
deconseq-standalone
dejagnu Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
delly2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
denovogear
dia Dia needs access to gettext and pkg-config. (#8840) 2018-08-01 19:12:17 -05:00
dialign-tx
diamond
diffsplice
direnv
discovar
discovardenovo
dislin style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
dlpack Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
dmd dmd: a new package. (#8826) 2018-08-02 22:07:01 -05:00
dmlc-core Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
dmtcp Add package DMTCP (#8808) 2018-07-26 09:47:55 -05:00
dmxproto
docbook-xml
docbook-xsl
dos2unix
double-conversion
doxygen
dri2proto
dri3proto
dsdp
dsrc
dtcmp
dyninst Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ea-utils
easybuild
ebms Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
eccodes
eclipse-gcj-parser
ecp-proxy-apps
ed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
editres
eigen
elasticsearch
elemental Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
elfutils elfutils: update version and add variants (#8891) 2018-08-07 14:04:05 -05:00
elk
elpa elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512) 2018-06-22 07:52:40 -05:00
emacs Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
emboss Skip update check. (#8683) 2018-07-27 09:57:05 -05:00
encodings
environment-modules
eospac
er ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
es
esmf
essl Unit test fixes 2018-07-25 23:10:10 -07:00
ethminer
etsf-io
everytrace Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
everytrace-example Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
evieext
exabayes
examinimd Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exampm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exasp2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exmcutils
exodusii Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
exonerate
expat
expect
express Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
extrae
exuberant-ctags
f90cache
fabtests
falcon Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
farmhash install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fast-gbs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fast-global-file-status add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
fasta Add package for fasta (#8953) 2018-08-11 11:38:31 -05:00
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fastqvalidator Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fasttree
fastx-toolkit
fenics
fermi
fermikit Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fermisciencetools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ferret
ffmpeg
fftw fftw: version bump (#8723) 2018-07-17 11:11:19 -05:00
fimpute
findutils Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
fio
fish
fixesproto
flac
flang Package/flang: Updated to use own version of llvm (#8766) 2018-08-03 20:35:09 -04:00
flann
flash
flatbuffers Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
flecsale Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
flecsi Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
flex
flint Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
flit
fltk
flux-core flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
flux-sched flux: update flux-core package and add a flux-sched package (#8818) 2018-08-02 16:20:55 -04:00
fluxbox Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
fmt
foam-extend install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
folly
font-adobe-75dpi
font-adobe-100dpi
font-adobe-utopia-75dpi
font-adobe-utopia-100dpi
font-adobe-utopia-type1
font-alias
font-arabic-misc
font-bh-75dpi
font-bh-100dpi
font-bh-lucidatypewriter-75dpi
font-bh-lucidatypewriter-100dpi
font-bh-ttf
font-bh-type1
font-bitstream-75dpi
font-bitstream-100dpi
font-bitstream-speedo
font-bitstream-type1
font-cronyx-cyrillic
font-cursor-misc
font-daewoo-misc
font-dec-misc
font-ibm-type1
font-isas-misc
font-jis-misc
font-micro-misc
font-misc-cyrillic
font-misc-ethiopic
font-misc-meltho
font-misc-misc
font-mutt-misc
font-schumacher-misc
font-screen-cyrillic
font-sony-misc
font-sun-misc
font-util
font-winitzki-cyrillic
font-xfree86-type1
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fpc
fr-hit
freebayes Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
freeglut
freetype
fseq
fsl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
fslsfonts
fstobdf
ftgl FTGL package workarounds (#8812) 2018-07-26 15:54:46 -05:00
funhpc Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
fyba
gapbs
gapcloser
gapfiller
gasnet
gatk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gaussian install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gawk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gblocks
gcc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gccmakedep
gccxml Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gconf
gcta
gdal Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
gdb Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gdbm Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gdk-pixbuf
gdl
geant4
gearshifft Further improvements to version parsing 2018-07-25 23:10:10 -07:00
gemmlowp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
genemark-et
genomefinisher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
genometools
geopm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
geos
gettext Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gflags
ghost Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ghostscript
ghostscript-fonts
giflib
git install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
git-imerge
git-lfs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gl2ps
glew
glfmultiples
glib glib: patch for rhel6, centos6, and sl6 (#8947) 2018-08-16 08:43:56 -07:00
glibmm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
glimmer
glm
global
globalarrays
globus-toolkit
glog Glog: make is a function (#8648) 2018-07-06 07:15:47 -05:00
gloo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
glpk Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
glproto
glvis Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
gmake Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmap-gsnap
gmime
gmp Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gmsh
gnat
gnu-prolog
gnupg
gnuplot
gnutls
go install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
go-bootstrap install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gobject-introspection
googletest
gotcha Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gource
gperf Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gperftools gperftools@2.7: new version; homepage, URL, hash updates (#9010) 2018-08-16 19:38:02 -05:00
gplates
grackle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
gradle install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
grandr
graph500
graphicsmagick
graphlib
graphmap Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
graphviz Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
grass grass improvement: specify proj data directory (#8984) 2018-08-15 09:54:08 -05:00
grib-api
grnboost New package: GRNBoost (#8763) 2018-08-02 13:46:36 -04:00
groff Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gromacs Add version 5.1.5 for gromacs. (#8948) 2018-08-11 09:21:32 -05:00
gsl Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gslib Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkmm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
gtkorvo-atl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-cercs-env Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-dill Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
gtkorvo-enet Gtkorvo updates (#8663) 2018-07-10 12:50:10 -05:00
gtkplus
gts
guidance
guile Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
gurobi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
h5hut
h5part
h5utils
h5z-zfp Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hacckernels Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hadoop
halc halc: Create new package. (#8795) 2018-07-26 15:55:43 -05:00
hapcut2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hapdip Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
haploview
harfbuzz
harminv
hdf
hdf5 hdf5: Fix build with %gcc@8 (#8788) 2018-07-26 15:58:00 -05:00
hdf5-blosc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
help2man Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
hepmc
heppdt
hic-pro HiC-pro depends on python+ucs4. (#8564) 2018-06-25 12:04:00 -05:00
highfive
highwayhash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hiop Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hisat2
hisea
hmmer hmmer: added version 3.2.1 & updated URL (#8787) 2018-07-26 10:07:55 -05:00
hoomd-blue All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpccg
hpctoolkit All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpctoolkit-externals All git URLs end in .git 2018-07-25 23:10:10 -07:00
hpgmg Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
httpie
hub Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
hunspell
hwloc
hybpiper
hydra
hydrogen Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
hypre Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
i3 Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
ibmisc
iceauth
icedtea
icet Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
ico
icu4c
id3lib
idba
igraph
igv
igvtools install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-tbb intel-tbb: Add tm variant to disable transactional memory. (#8799) 2018-07-25 23:14:17 -07:00
intel-xed All git URLs end in .git 2018-07-25 23:10:10 -07:00
intltool
ior
iozone
iperf2 Packaged iperf2 (#8765) 2018-07-19 17:55:06 -05:00
iperf3 Packaged iperf3 (#8762) 2018-07-19 16:02:55 -05:00
ipopt
isaac Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
isaac-server Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
isl
itstool
itsx
jags
jansson
jasper
jbigkit
jchronoss
jdk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
jellyfish Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
jemalloc
jmol install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
jq
json-c
json-cwx
json-glib
jsoncpp
judy
julia Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
k8
kahip Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
kaiju
kaks-calculator
kaldi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
kallisto
kbproto
kdiff3
kealib Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kentutils Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kim-api kim-api: initial commit (#8873) 2018-08-04 16:47:35 -05:00
kmergenie
kokkos Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kraken
krb5
krims Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kripke Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
kvasir-mpl Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
kvtree ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
laghos Update homepage for laghos (#8864) 2018-08-02 13:03:52 -04:00
lammps All git URLs end in .git 2018-07-25 23:10:10 -07:00
last
latte Further improvements to version parsing 2018-07-25 23:10:10 -07:00
launchmon
lazyten Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lbann Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lbxproxy
lcals Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
lcms
ldc Further improvements to version parsing 2018-07-25 23:10:10 -07:00
ldc-bootstrap
legion Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
leveldb install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle libbeagle: add java dependency so jni hooks get built (#8524) 2018-07-22 17:16:43 -05:00
libbeato New packages: libbeato bwtool. (#8681) 2018-07-11 10:33:44 -05:00
libbsd
libbson
libcanberra
libcap
libceed Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libcerf
libcheck
libcint libcint: New version 3.0.12 (#9003) 2018-08-16 15:59:26 -05:00
libcircle
libconfig Further improvements to version parsing 2018-07-25 23:10:10 -07:00
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf libdwarf: remove use of hide_files() 2018-08-02 19:00:52 -07:00
libedit
libelf
libemos
libepoxy
libev Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
libevent
libevpath Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libfabric
libffi
libffs Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libgpg-error
libgpuarray
libgridxc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
libgtextutils
libharu Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libhio
libiberty Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libice
libiconv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmatheval Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libmaxminddb
libmesh
libmng
libmongoc libmongoc: Fix build (#9012) 2018-08-17 08:22:30 -05:00
libmonitor libmonitor: update version and add variant to configure (#8834) 2018-08-03 14:00:12 -04:00
libnbc
libnl
libnova libnova: new package (#8666) 2018-07-09 16:16:09 -05:00
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libpng
libpsl
libpthread-stubs
libquo Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
librom Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libshm Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libsigcpp new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
libsigsegv Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libsm
libsodium
libspatialindex
libsplash Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
libssh
libssh2
libsvm
libszip
libtermkey
libtiff
libtool Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunistring Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
libunwind libunwind: add version 1.3-rc1 and variant xz (#8989) 2018-08-17 08:22:04 -05:00
libuuid
libuv
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence libxshmfence: Update to 1.3 (#8667) 2018-07-10 07:58:44 -05:00
libxslt
libxsmm Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyogrt
libzip
likwid LIKWID: Switch to perf_event backend to allow user installations but with limited features (#8886) 2018-08-06 09:21:30 -05:00
linkphase3 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
linux-headers
listres
llvm install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
llvm-openmp-ompt Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lmdb
lmod lmod: add version 7.8 (#8838) 2018-07-31 23:19:41 -07:00
lndir
log4cplus Add new versions for log4cplus. (#8621) 2018-07-03 10:08:22 -05:00
log4cxx
loki
lordec
lrslib
lrzip Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
lsof
ltrace
lua Add unzip runtime dependency to lua package (#8831) 2018-08-05 13:26:22 -05:00
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh Update broken codesign.llnl.gov urls (#8880) 2018-08-03 10:25:10 -05:00
lumpy-sv
lwgrp
lwm2 Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
lz4
lzma
lzo
m4 Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
macsio Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mad-numdiff All git URLs end in .git 2018-07-25 23:10:10 -07:00
mafft
magics
magma
makedepend
mallocmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
man-db
manta
maq
mariadb
masa Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
masurca install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
matio
matlab style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
maven install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
maverick
mawk
mbedtls
mc Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
mcl
mdtest Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
med add MoFEM packages (#8700) 2018-07-22 15:26:30 -05:00
meep
mefit install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
megahit A new package: megahit. (#8471) 2018-06-14 13:45:12 -05:00
memaxes
meme
memkind
meraculous Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mercurial
mesa Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
mesa-glu Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
meshkit
meson
mesquite
metabat
metaphysicl
metasv
metis style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
mfem install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
microbiomeutil
minced
mindthegap Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniaero Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniamr Further improvements to version parsing 2018-07-25 23:10:10 -07:00
miniasm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minixyce
minuit Added minuit package (#8536) 2018-06-22 11:27:25 -05:00
mira
mirdeep2
mitofates mitofates: more deps and a patch to make it functional (#8686) 2018-07-12 10:23:22 +02:00
mitos Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mkfontdir
mkfontscale
mlhka Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
moab add necessary dependence on lapacak, and fix ld_flags for blas (#8776) 2018-07-22 16:32:47 -05:00
modern-wheel
mofem-cephas Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-fracture-module Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-minimal-surface-equation Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mofem-users-modules add MoFEM packages (#8700) 2018-07-22 15:26:30 -05:00
molcas
mono
mosh
mothur mothur: mpi not used (#8706) 2018-07-13 20:31:25 -05:00
motif
motioncor2
mount-point-attributes add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
mozjs
mpark-variant
mpc Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpe2
mpest
mpfr Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
mpibash
mpiblast
mpich Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mpifileutils Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mpilander Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mpileaks
mpip
mpir Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mpix-launch-swift install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mrbayes Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mrnet Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
mrtrix3 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
mscgen
msgpack-c
mshadow Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
multitail
multiverso Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
mummer
mumps Change MUMPS to allow it to build with clang+xlf compiler combination (#8388) 2018-08-02 14:23:37 -04:00
munge
muparser
muscle
muse
muster
mvapich2 Bump mvapich2 to the latest v2.3 release. (#8892) 2018-08-06 12:03:33 +02:00
mxml
mxnet
nag
nalu Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nalu-wind Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
namd install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast New package ncbi-magicblast (#8517) 2018-06-22 17:48:32 -05:00
ncbi-rmblastn
ncbi-toolkit style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
nccl
nccmp
ncdu
ncftp
ncl install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
nco
ncurses Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
ncview
ndiff
nek5000 Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nekbone fix for issue #8845 (#8988) 2018-08-16 13:22:44 -06:00
nekcem Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nektar
neovim package neovim: add info for version 0.3.1 (#8866) 2018-08-02 13:04:59 -04:00
netcdf style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
netcdf-cxx
netcdf-cxx4
netcdf-fortran netcdf-fortran: enforce autoreconf when building with NAG. (#8844) 2018-08-02 08:32:20 -05:00
netgauge
netgen netgen should depend on zlib (#8473) 2018-06-14 13:43:43 -05:00
netlib-lapack Small patch for netlib-lapack. (#8854) 2018-08-01 18:55:07 -05:00
netlib-scalapack
netlib-xblas
nettle Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
neuron Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
nextflow
nfft
nghttp2
nginx
ngmlr
ninja
ninja-fortran
nlohmann-json
nlopt Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nmap Added nmap version 7.70 (#8606) 2018-06-28 15:32:43 -05:00
nnvm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
node-js
notmuch
npb
npm
npth
nspr
numactl numactl: fix build with glibc-2.26 (#8615) 2018-06-29 14:41:52 -05:00
numdiff
nut Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
nwchem nwchem: add link type to python dep (#8759) 2018-07-19 12:03:40 -05:00
ocaml
occa install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
oce style: make core comply with pep8-naming 2018-07-19 00:41:36 -07:00
oclint
oclock
octave Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
octave-optim
octave-splines
octave-struct
octopus
of-adios-write Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
of-precice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
omega-h omega-h: fix -std=c++11 build error (#8543) 2018-06-23 07:25:33 -05:00
ompss
ompt-openmp
oniguruma
ont-albacore added albacore version 2.3.1 (#8513) 2018-06-19 11:16:41 -05:00
opa-psm2
opam
opari2
openbabel
openblas openblas: add version 0.3.2 (#8833) 2018-08-01 19:14:48 -05:00
opencoarrays
opencv Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
openexr
openfast Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openfoam-com install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
openfoam-org install_tree: symlink handling and add 'ignore' option (#9019) 2018-08-17 22:08:38 -04:00
openfst
opengl Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
openglu Add libs attribute to mesa and mesa-glu packages (#8904) 2018-08-07 10:18:05 +02:00
openjpeg
openmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openmpi Fix openmpi to work with slurm/pmi and mxm (#8427) 2018-08-02 14:06:39 -04:00
opennurbs Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openpmd-api Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openscenegraph
openslide
openspeedshop Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openspeedshop-utils Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
openssh
openssl openssl: add new version 1.0.2o (#8486) 2018-06-15 09:54:52 +02:00
opium
opus
orfm
orthofinder
orthomcl
osu-micro-benchmarks
otf
otf2
p4est
p7zip
pacbio-daligner Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-damasker Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-dazz-db Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pacbio-dextractor Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pagit
pagmo
paml
panda
pandaseq Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
pango
pangomm new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
papi papi: Update to 5.6.0 and fix build with %gcc@8 (#8796) 2018-07-26 10:02:07 -05:00
papyrus Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
paradiseo Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
parallel Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
parallel-netcdf
paraver
paraview
parmetis
parmgridgen
parquet Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
parsimonator Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
parsplice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
partitionfinder
patch Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
patchelf
pathfinder
pax-utils
pbbam
pbmpi Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
pegtl Further improvements to version parsing 2018-07-25 23:10:10 -07:00
pennant
percept Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
perl Make read only source file writeable in perl before patch to avoid failures on lustre filesystem. (#8764) 2018-07-22 16:51:59 -05:00
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-compress-raw-bzip2 A new perl package: perl-io-compress. (#8566) 2018-06-25 12:02:04 -05:00
perl-compress-raw-zlib A new perl package: perl-io-compress. (#8566) 2018-06-25 12:02:04 -05:00
perl-contextual-return Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-cpan-meta-check
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-depends
perl-extutils-makemaker
perl-extutils-pkgconfig Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
perl-file-copy-recursive
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-gd-text
perl-graph
perl-graph-readwrite
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-cdf
perl-math-cephes perl-math-cephes: new package (#8671) 2018-07-11 12:40:39 -05:00
perl-math-matrixreal
perl-module-build
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl6-slurp perl6-slurp: new package (#8672) 2018-08-09 10:35:54 -05:00
perl-perlio-gzip
perl-perlio-utf8-strict
perl-soap-lite Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-star-fusion Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version Further improvements to version parsing 2018-07-25 23:10:10 -07:00
perl-want
perl-www-robotrules
perl-xml-libxml
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml-libyaml
petsc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pexsi install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pfft
pflotran Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pfunit
pgdspider
pgi
pgmath Package/flang: Updated to use own version of llvm (#8766) 2018-08-03 20:35:09 -04:00
phantompeakqualtools
phast
phasta Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
phist Phist 1.6.1 (#8933) 2018-08-10 12:53:18 -05:00
phylip
picard install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pidx Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pigz
pilon install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
pindel install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
piranha Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
pism Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pixman Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449) 2018-06-22 08:03:47 -05:00
pkg-config
pkgconf
planck-likelihood style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
plasma Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
platypus style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
plink
plplot
plumed
pmgr-collective
pmix
pnfft
pngwriter Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pnmpi
poamsa
pocl Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
polymake
poppler All git URLs end in .git 2018-07-25 23:10:10 -07:00
poppler-data
porta
portage Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
postgresql
ppl
prank
precice Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
pruners-ninja
ps-lite Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
psi4
pslib
psm Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
psmc Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pstreams
pugixml
pumi Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
pv
pvm
pxz Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
py-3to2
py-4suite-xml
py-abipy
py-adios Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-affine
py-alabaster
py-apache-libcloud
py-apipkg
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astroid
py-astropy
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall Add py-backcall (#8701) 2018-07-13 10:59:02 -05:00
py-backports-abc
py-backports-functools-lru-cache Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
py-backports-shutil-get-terminal-size views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
py-backports-ssl-match-hostname views: packages can customize how they're added to views (#7152) 2018-06-26 16:14:05 -07:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format Package py-biom-format fixes (#8727) 2018-08-02 13:51:51 -04:00
py-biopython
py-bitarray
py-bitstring
py-bleach
py-blessings
py-bokeh
py-boltons
py-bottleneck
py-breakseq2
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
py-cffi
py-chardet
py-checkm-genome
py-cheetah new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
py-click
py-cligj
py-cloudpickle
py-cnvkit
py-cogent
py-colorama
py-colormath
py-configparser
py-counter
py-coverage
py-cpuinfo
py-crispresso
py-crossmap py-crossmap: needs py-setuptools (#8898) 2018-08-06 17:43:14 -05:00
py-cryptography
py-csvkit
py-current
py-cutadapt py-cutadapt: needs py-setuptools at runtime (#8689) 2018-07-11 14:53:35 -05:00
py-cvxopt
py-cycler
py-cython
py-dask
py-dateutil
py-dbf
py-decorator
py-deeptools
py-dendropy
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-dxchange
py-dxfile
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-edffile Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-entrypoints
py-enum34
py-epydoc
py-espresso Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-espressopp Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-et-xmlfile
py-eventlet
py-execnet
py-fastaindex
py-fasteners
py-faststructure
py-fiscalyear Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-flake8
py-flake8-polyfill add py-pep8-naming package 2018-07-19 00:41:36 -07:00
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-fn py-fn: new package (#8705) 2018-07-13 20:31:39 -05:00
py-fparser Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-funcsigs
py-functools32
py-future
py-futures
py-gdbgui
py-genders
py-genshi
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-gpaw
py-greenlet
py-griddataformats
py-guidata
py-guiqwt
py-h5py
py-html2text
py-html5lib
py-htseq
py-httpbin
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio Add py-imageio for python3 (#8553) 2018-06-26 12:55:10 -05:00
py-imagesize
py-iminuit
py-importlib
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-joblib
py-jpype
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-keras
py-kiwisolver
py-lark-parser Py-lark-parser: new package (#8761) 2018-07-19 14:00:19 -05:00
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property Adding lazy property python module (#47) (#8867) 2018-08-02 11:44:16 -05:00
py-lazyarray
py-libconf
py-libensemble Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-lxml
py-lzstring
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-mappy
py-markdown
py-markupsafe
py-matplotlib
py-mccabe
py-mdanalysis
py-meep
py-memory-profiler
py-methylcode
py-mg-rast-tools Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-misopy
py-mistune
py-mock
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-mpmath
py-multiprocess
py-multiqc
py-mx
py-mxnet
py-myhdl
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nosexcover
py-numba Updated llvm to version 6.0.1. The previous 6.0.0 had an incorrectly … (#8801) 2018-07-26 17:47:18 -05:00
py-numexpr update version for numexpr (#8702) 2018-07-13 15:50:21 -05:00
py-numexpr3
py-numpy py-numpy: Add CPATH in modulefile (#8466) 2018-07-26 17:50:00 -05:00
py-numpydoc
py-olefile
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-ordereddict
py-oset
py-owslib
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pbr
py-pep8-naming add py-pep8-naming package 2018-07-19 00:41:36 -07:00
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-pil
py-pillow Updating py-pillow with change in checksum for version 5.1.0. (#8547) 2018-06-22 18:02:27 -05:00
py-pip
py-pipits
py-pkgconfig py-pkgconfig: Made nose dependency type=build,test instead of just type=test, to prevent setuptools from silently installing its own copy of nose (#8749) 2018-07-18 21:42:04 -05:00
py-plotly
py-pluggy
py-ply py-ply: added version 3.11 (#8383) 2018-07-11 22:21:55 +02:00
py-pmw
py-poster
py-pox
py-ppft
py-prettytable
py-proj Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-projectq Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyasn1
py-pybedtools
py-pybigwig
py-pybind11 Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pybtex
py-pybtex-docutils
py-pychecker
py-pycodestyle
py-pycparser pycparser: add version 2.18 (#8760) 2018-07-19 12:49:05 -05:00
py-pycrypto
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pygments
py-pygobject
py-pygpu
py-pygtk
py-pylint Further improvements to version parsing 2018-07-25 23:10:10 -07:00
py-pymatgen
py-pyminifier
py-pymol
py-pympler
py-pynn Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pypar
py-pyparsing
py-pypeflow Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pyprof2html
py-pyqi py-pyqi: new package (#8726) 2018-07-17 16:07:38 -05:00
py-pyqt
py-pyrad
py-pysam
py-pyscaf
py-pyserial Fix base class for py-pyserial (#8633) 2018-07-02 22:47:56 -05:00
py-pyshp
py-pyside
py-pysocks
py-pysqlite
py-pytables
py-pytest modified: var/spack/repos/builtin/packages/py-pytest/package.py (#8890) 2018-08-06 09:21:49 -05:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-python-daemon
py-python-engineio
py-python-gitlab
py-python-levenshtein
py-python-socketio
py-pythonqwt
py-pytorch Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-pytz
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-radical-utils
py-ranger
py-rasterio
py-readme-renderer
py-regex
py-reportlab
py-requests
py-requests-toolbelt
py-restview
py-rope
py-rpy2 added rpy2 2.9.4 and added py-jinja2 dependency (#8645) 2018-07-05 21:33:32 -05:00
py-rsa
py-rseqc
py-rtree
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scipy Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
py-seaborn
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs py-snuggs: Added depends_on py-parsing. The build uses setuptools, which would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748) 2018-07-18 21:42:57 -05:00
py-spectra
py-spefile Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-subprocess32
py-symengine Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
py-symfit
py-sympy
py-tabulate
py-tappy
py-terminado
py-testinfra
py-tetoolkit
py-theano Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-tifffile
py-toml
py-tomopy
py-toolz
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-tuiview
py-twisted
py-typing
py-tzlocal
py-udunits
py-umi-tools
py-unittest2
py-unittest2py3k
py-urllib3
py-urwid
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vmd-python added py-setuptools as dependency (#8843) 2018-08-02 11:24:26 -05:00
py-vsc-base
py-vsc-install
py-wcsaxes
py-wcwidth
py-webkit-server Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-weblogo
py-werkzeug
py-wheel
py-widgetsnbextension
py-wrapt
py-xarray
py-xattr Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
py-zmq
py-zope-event
py-zope-interface
python add patch for gcc@8 for python 2.7.14 (#8990) 2018-08-16 07:51:09 -05:00
qbank
qbox install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qhull
qmcpack QMCPACK Spack Package Update (Summer 2018) (#9008) 2018-08-18 11:26:17 -05:00
qmd-progress Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
qorts install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
qrupdate
qt
qt-creator
qtgraph qtgraph and cbtf-argonavis create proper library paths in modules (#8797) 2018-08-17 15:58:08 -07:00
qthreads
quantum-espresso Further improvements to version parsing 2018-07-25 23:10:10 -07:00
quinoa Add top-level attributes for git M-P packages 2018-07-25 23:10:10 -07:00
qwt
r install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
r-a4 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4base Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4classif Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4core Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4preproc Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-a4reporting Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-abadata
r-abaenrichment Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-abind
r-absseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-acde
r-acepack
r-acgh Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-acme Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aer r-aer: a new package. (#8567) 2018-06-28 15:40:00 -05:00
r-affxparser Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycomp Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycompatible Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycontam Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affycoretools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affydata
r-affyexpress Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyilm Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affypdnn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyplm Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyqcreport Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-affyrnadegradation Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agdex Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agilp Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-agimicrorna Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aims Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aldex2 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-allelicimbalance Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-alpine Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-als
r-alsace Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-altcdfenvs Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-amap r-amap: new package (#8935) 2018-08-10 15:21:22 -05:00
r-ampliqueso Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-analysispageserver Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-anaquin Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aneufinder Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-aneufinderdata Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotate Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationdbi Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationfilter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationforge Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-annotationhub Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ape
r-argparse r-argparse: new package (#8944) 2018-08-13 22:21:30 -05:00
r-assertthat
r-backports
r-bamsignals Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-base64
r-base64enc
r-bbmisc
r-beanplot
r-bh
r-biasedurn r-biasedurn: new package (#8937) 2018-08-10 16:08:31 -05:00
r-bindr
r-bindrcpp r-bindrcpp: add new version (#8950) 2018-08-11 09:21:05 -05:00
r-biobase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biocgenerics Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biocinstaller Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biocparallel Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biocstyle Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biom-utils
r-biomart Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biomformat Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biostrings Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-biovizbase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-bit
r-bit64
r-bitops
r-blob
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-bumphunter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-c50
r-callr
r-car
r-caret
r-category Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-catools
r-cdcfluview
r-cellranger
r-cghflasso
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-clusterprofiler Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-cner Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-coda
r-codetools
r-coin
r-colorspace
r-complexheatmap Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-ctc r-ctc: new package (#8936) 2018-08-12 19:46:14 -05:00
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-deseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-deseq2 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-dismo
r-dnacopy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-do-db
r-domc
r-doparallel
r-dorng
r-dose Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-e1071
r-edger r-edger: new version (#8951) 2018-08-13 22:18:34 -05:00
r-ellipse
r-ensembldb Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ergm
r-evaluate
r-expm
r-factoextra
r-factominer
r-fastcluster r-fastcluster: new package (#8934) 2018-08-10 15:01:12 -05:00
r-fastmatch
r-ff
r-fftwtools
r-fgsea Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-filehash
r-findpython r-findpython: new package (#8943) 2018-08-11 09:23:34 -05:00
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gbm
r-gcrma Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gdata
r-gdsfmt Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-geiger
r-genefilter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genelendatabase r-genelendatabase: new package (#8938) 2018-08-13 22:21:03 -05:00
r-geneplotter Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genie3 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomeinfodb Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomeinfodbdata
r-genomicalignments Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomicfeatures Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-genomicranges Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-geomorph
r-geoquery Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma r-glimma: new package (#8940) 2018-08-13 22:20:41 -05:00
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot r-goplot: new package (#8942) 2018-08-11 09:26:16 -05:00
r-gosemsim Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gostats Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gplots
r-graph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gridbase
r-gridextra
r-gseabase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-gviz Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-htmltable
r-htmltools
r-htmlwidgets
r-httpuv
r-httr
r-hwriter
r-hypergraph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ica
r-igraph
r-illuminaio Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-impute Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-influencer
r-inline
r-interactivedisplaybase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-ipred
r-iranges Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-irdisplay
r-irkernel Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-irlba
r-iso
r-iterators
r-janitor
r-jaspar2018 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-keggrest Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma r-limma: new version (#8952) 2018-08-13 22:18:12 -05:00
r-lme4
r-lmtest
r-locfit
r-log4r
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-maldiquant
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-multcomp
r-multtest Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-munsell
r-mvtnorm
r-mzid Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-mzr Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-np
r-numderiv
r-oligoclasses Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-oo
r-openssl
r-org-hs-eg-db
r-organismdbi Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-packrat
r-pacman
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-picante
r-pkgconfig
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-powerlaw
r-prabclus
r-praise
r-preprocesscore Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-prettyunits
r-proc
r-prodlim
r-progress
r-protgenerics Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-proto
r-proxy
r-pryr
r-psych
r-ptw
r-purrr
r-quadprog
r-quantmod
r-quantreg
r-quantro Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-qvalue Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-r6
r-randomforest
r-ranger
r-rappdirs
r-raster
r-rbgl Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rhdf5 Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rhtslib Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
r-rmysql
r-rngtools
r-robustbase
r-rocr
r-rodbc
r-rots r-rots: new package (#8941) 2018-08-14 07:14:06 -05:00
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rsamtools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rsnns
r-rsolnp
r-rsqlite Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-rstan
r-rstudioapi
r-rtracklayer Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-rtsne
r-rvcheck
r-rvest
r-rzmq
r-s4vectors Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-seurat
r-sf
r-sfsmisc Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-shape
r-shiny
r-shinydashboard
r-shortread Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-siggenes Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-simpleaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-sm r-sm: new package (#8945) 2018-08-11 09:22:21 -05:00
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-som
r-somaticsignatures Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-sourcetools
r-sp
r-sparsem
r-spatial Further improvements to version parsing 2018-07-25 23:10:10 -07:00
r-spdep
r-speedglm
r-spem Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-splitstackshape
r-sqldf
r-squash
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-survey
r-survival
r-sva Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-tarifx
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-topgo Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-utf8
r-utils
r-uuid
r-variantannotation Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-varselrf
r-vcd
r-vegan
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-whisker
r-withr
r-xde Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-xml
r-xml2
r-xtable
r-xts
r-xvector Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-yaml
r-yapsa Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-yaqcaffy Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-yarn Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-zlibbioc Add top-level attributes for git R (Bioconductor) packages 2018-07-25 23:10:10 -07:00
r-zoo
racon
raft Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
ragel
raja Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
randfold
random123
randrproto
rankstr ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
rapidjson
ravel
raxml
ray
rdma-core
rdp-classifier
re2c
readfq Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
readline Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
recordproto
redset ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
redundans
relion added relion version 3 (beta) (#8872) 2018-08-16 10:51:58 -05:00
rempi added ReMPI version 1.1.0 (#8548) 2018-06-22 17:03:41 -05:00
rename
rendercheck
renderproto
repeatmasker install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
resourceproto
revbayes
rgb
rhash
rlwrap
rmlab Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
rna-seqc install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
rngstreams
rockstar install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
root
rose Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
ross ROSS: added ROSS package (#8964) 2018-08-15 14:24:28 -07:00
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby Add url_for_version and list_url to Ruby package (#8216) 2018-07-06 07:22:38 -05:00
ruby-gnuplot
ruby-narray All git URLs end in .git 2018-07-25 23:10:10 -07:00
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
rust-bindgen
sabre Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sailfish Further improvements to version parsing 2018-07-25 23:10:10 -07:00
salmon
sambamba Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
samblaster
samrai samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501) 2018-06-18 13:52:24 -05:00
samtools Add samtools 1.9 (#8961) 2018-08-12 18:54:50 -05:00
sandbox
sas
satsuma2 Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
savanna install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
saws Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sbt install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
scala
scalasca
scalpel
scan-for-matches
scons
scorec-core Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
scorep scorep: make optional packages variants (#9011) 2018-08-18 11:25:05 -05:00
scotch Scotch: update package (#8711) 2018-07-15 15:54:28 -05:00
scr install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
screen Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
scripts
scrnsaverproto
sctk install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sdl2
sdl2-image
sed Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
seqan
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
sickle
siesta
signalp
signify
silo silo: Make silo use AutotoolsPackage (#8551) 2018-06-22 17:19:03 -05:00
simplemoc simplemoc: version bump (#8884) 2018-08-03 14:31:06 -05:00
simul
simulationio Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
singularity Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sleef
slepc slepc: add blopex variant (#8820) 2018-07-30 18:18:36 -05:00
slurm
smalt
smproxy
snakemake
snap Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
snap-berkeley
snap-korf
snappy Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
snbone Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sniffles
snpeff install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snphylo install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sosflow Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sowing sowing: update to version used by current petsc -i.e 1.1.25-p1 (#8561) 2018-06-24 17:02:39 -05:00
sox
spades
spark install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sparsehash
sparta
spdlog
spectrum-mpi Further improvements to version parsing 2018-07-25 23:10:10 -07:00
speex
spglib
sph2pipe
spherepack
spindle
spot
sqlite
sqlitebrowser
squid
sra-toolkit
sspace-longread
sspace-standard
sst-dumpi Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
sst-macro Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
stacks
staden-io-lib
star Remove unnecessary version-specific URL overrides (#8693) 2018-07-12 07:28:11 +02:00
star-ccm-plus
startup-notification
stat add fgfs variant to stat and develop version (#8919) 2018-08-09 10:56:08 -05:00
stc
stow Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
strace
stream Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
strelka
stress
stringtie
structure
sublime-text install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
subread
subversion
suite-sparse suite-sparse: add version 5.3.0 (#8837) 2018-08-02 07:25:57 +02:00
sumaclust
sundials
superlu
superlu-dist superlu_dist should be built with 'HAVE_PARMETIS=TRUE'. (#8917) 2018-08-08 20:50:48 -04:00
superlu-mt
supernova install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
sw4lite All git URLs end in .git 2018-07-25 23:10:10 -07:00
swap-assembler
swarm
swfft All git URLs end in .git 2018-07-25 23:10:10 -07:00
swiftsim
swig
symengine Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
sympol
sz sz: fix checksum for 2.0.2.0 (#8868) 2018-08-02 11:43:59 -05:00
tabix Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
talloc
tantan
tar Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
targetp
task
taskd
tasmanian added Tasmanian versions 5.1 and development, enabled the Tasmanian options through +~ flags (#8804) 2018-07-27 10:10:32 -05:00
tassel Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tau Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
tcl
tcl-itcl Add package tcl-itcl (#8578) 2018-06-27 10:05:00 -05:00
tcl-tcllib
tcl-tclxml
tclap
tcoffee Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tcptrace style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
tcsh style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
tealeaf
templight Templight package (#8782) 2018-07-26 11:19:14 -05:00
templight-tools Templight package (#8782) 2018-07-26 11:19:14 -05:00
tetgen
tethex Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
texinfo Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
texlive
the-platinum-searcher install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
the-silver-searcher
thrift Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00
thrust
tig
tinyxml install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
tinyxml2
tioga Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tk
tmalign
tmhmm
tmux
tmuxinator Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
tophat
tppred
transabyss
transdecoder transdecoder: needs perl-uri-escape (#8690) 2018-07-11 17:38:58 -05:00
transposome
transset
trapproto
tree
trf
triangle
trilinos Trilinos: Update rules for superlu-dist version compatibility. (#8851) 2018-08-02 11:25:30 -05:00
trimgalore
trimmomatic install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
trinity install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
trnascan-se
turbine
turbomole
tut
twm
tycho2 Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
typhon Unit test fixes 2018-07-25 23:10:10 -07:00
typhonio Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
uberftp
ucx
udunits2
ufo-core
ufo-filters
umpire Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
unblur
uncrustify Added support for uncrustify 0.67. (#8655) 2018-07-06 19:59:34 -05:00
unibilium
unison
units Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
valgrind Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
vegas2
veloc ECP VELOC Package update (#8910) 2018-08-08 21:40:38 -04:00
velvet
verilator style: bring packages in compliance with pep8-naming 2018-07-19 00:41:36 -07:00
verrou Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
videoproto
viennarna
viewres
vim
virtualgl
visit
vizglow
vmatch
voropp
votca-csg Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-ctp Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-tools Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
votca-xtp Further improvements to version parsing 2018-07-25 23:10:10 -07:00
vpfft Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vpic Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vsearch
vt
vtk Specify Python executable in VTK package (#9000) 2018-08-17 14:51:49 -05:00
vtkh Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
vtkm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wannier90 install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wcslib Add missing dependencies and variants to wcslib (#8603) 2018-07-05 21:36:29 -05:00
wget Download GNU packages from mirrors (#8992) 2018-08-15 23:27:21 -07:00
wgsim Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
windowswmproto
wireshark Replace pkg-config dependencies with virtual (#8783) 2018-08-02 13:29:04 -04:00
workrave install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
wt Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wx Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
wxpropgrid
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xclip Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgc
xhmm Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xhost
xineramaproto
xinit
xinput
xios Add top-level attributes for hg, svn, and git A-L packages 2018-07-25 23:10:10 -07:00
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd new package: XSD (#8784) 2018-08-02 16:28:19 -04:00
xsdk xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932) 2018-08-13 22:17:17 -07:00
xsdktrilinos Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xset
xsetmode
xsetpointer
xsetroot
xsimd Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xsm
xstdcmap
xtensor Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xtensor-python Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xterm
xtl Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash New package xxhash. (#8530) 2018-06-20 13:51:53 -05:00
xz
yajl Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
yambo Further improvements to version parsing 2018-07-25 23:10:10 -07:00
yaml-cpp Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
yasm Replace git=git with explicit branch names 2018-07-25 23:10:10 -07:00
yorick install_tree, copy_tree can install into existing directory structures (#8289) 2018-08-15 09:30:09 -07:00
z3
zeromq Add top-level attributes for git R-Z packages 2018-07-25 23:10:10 -07:00
zfp
zip
zlib
zoltan zoltan: fix building with Intel compilers (#8985) 2018-08-15 10:40:58 -05:00
zsh packages: do not use generic checksum= in version() directives 2018-07-23 11:57:52 -07:00
zstd Parquet: new packages (#8601) 2018-07-04 07:24:38 -05:00