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Nichols A. Romero f4ee07527c QMCPACK Spack Package Update (Summer 2018) (#9008) 
* QMCPACK now supports QE 6.3. Dropped QE 5.3 due to incompatibilities.

* QMCPACK general clean-up of depends_on.

* Add QMCPACK 3.5.0

* More robust support of MKL detection in QMCPACK.
2018-08-18 11:26:17 -05:00
..
abinit
abinit: added version 8.8.2 (#8294)
2018-05-28 08:11:43 -05:00
abyss
Fix digest for abyss@1.5.2 (#8341)
2018-06-01 15:06:45 -05:00
accfft
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ack
…
activeharmony
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adept-utils
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adios
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
adios2
adios2: add 2.2.0 (#8871)
2018-08-02 11:16:17 -05:00
adlbx
…
adol-c
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
aegean
Aegean: new package (#8113)
2018-05-14 11:10:19 -05:00
albany
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
albert
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alglib
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
allinea-forge
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allinea-reports
…
allpaths-lg
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alquimia
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
alsa-lib
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amg
Update broken codesign.llnl.gov urls (#8880)
2018-08-03 10:25:10 -05:00
amg2013
Update broken codesign.llnl.gov urls (#8880)
2018-08-03 10:25:10 -05:00
amp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ampliconnoise
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amrex
xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932)
2018-08-13 22:17:17 -07:00
amrvis
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
andi
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angsd
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ant
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antlr
antlr: Turn off CSharp (#8157)
2018-05-18 10:39:30 -07:00
ants
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ape
…
apex
…
apple-libunwind
apple-libunwind: new package, provides unwind
2018-08-06 22:01:50 -07:00
applewmproto
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appres
…
apr
…
apr-util
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aragorn
ARAGORN: Create new package (#7875)
2018-04-23 16:51:42 -05:00
archer
…
argp-standalone
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argtable
…
arlecore
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
armadillo
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arpack-ng
arpack: add version 3.6.2 (#8881)
2018-08-03 09:53:44 -05:00
arrow
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00
ascent
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
asciidoc
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aspa
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
aspcud
…
aspect
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
aspell
views: packages can customize how they're added to views (#7152)
2018-06-26 16:14:05 -07:00
aspell6-de
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
aspell6-en
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
aspell6-es
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
aspera-cli
aspera-cli: a new package. (#8715)
2018-07-16 13:53:23 -05:00
assimp
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
astra
…
astral
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astyle
astyle: add 3.1 (#8137)
2018-05-15 09:43:27 -05:00
at-spi2-atk
Packages/atk (#9002)
2018-08-16 18:11:52 -05:00
at-spi2-core
Packages/atk (#9002)
2018-08-16 18:11:52 -05:00
atk
Packages/atk (#9002)
2018-08-16 18:11:52 -05:00
atlas
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atom-dft
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
atompaw
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atop
…
augustus
Augustus updated to version 3.3.1 (#8588)
2018-07-22 17:11:37 -05:00
autoconf
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
autodock-vina
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
autogen
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
automaded
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automake
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
axel
A new package: axel. (#8434)
2018-06-10 15:16:16 -05:00
axl
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
bamtools
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bamutil
…
barrnap
…
bash
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
bash-completion
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
bats
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bazel
Add latest versions of bazel (#8250)
2018-05-23 07:27:45 -05:00
bbcp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
bbmap
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bc
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
bcftools
Bump samtools, hstlib and bcftools to version 1.8. (#8020)
2018-05-04 16:27:54 -05:00
bcl2fastq2
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
bdftopcf
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bdw-gc
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bear
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beast1
beast1: add libbeagle support (#8525)
2018-07-22 17:17:03 -05:00
beast2
…
bedops
Add info for bedops@v2.4.35 (#8310)
2018-05-29 14:46:42 -05:00
bedtools2
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beforelight
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benchmark
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
berkeley-db
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bertini
…
bib2xhtml
…
bigreqsproto
…
binutils
binutils@2.31.1: new version (#9007)
2018-08-16 18:10:08 -05:00
bioawk
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
biopieces
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
bismark
bismark: Create new package (#7795)
2018-04-17 14:45:10 -05:00
bison
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
bitmap
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blasr
blasr: new package (#8367)
2018-07-07 10:05:57 -05:00
blasr-libcpp
blasr-libcpp: new package (#8366)
2018-06-13 08:55:31 -05:00
blast-plus
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blat
…
blaze
…
blis
Add blis package (#8925)
2018-08-16 11:26:43 -05:00
bliss
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blitz
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bmake
Add bmake 20180512 (#8221)
2018-05-21 15:58:11 -05:00
bml
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
bohrium
Update bohrium version (#9020)
2018-08-18 09:22:16 -05:00
bookleaf-cpp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
boost
boost: add 1.68.0 (#8931)
2018-08-09 17:08:20 -05:00
boostmplcartesianproduct
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bowtie
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bowtie2
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boxlib
Correcting position independent code setting for boxlib and amrex. (#8537)
2018-06-21 16:37:10 -05:00
bpp-core
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bpp-phyl
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bpp-seq
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bpp-suite
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bracken
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braker
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branson
All git URLs end in .git
2018-07-25 23:10:10 -07:00
breakdancer
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
breseq
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brigand
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
bsseeker2
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bucky
…
bumpversion
Add package for "bumpversion" (#8078)
2018-05-12 18:37:10 -05:00
busco
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
butter
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bwa
Remove unnecessary version-specific URL overrides (#8693)
2018-07-12 07:28:11 +02:00
bwtool
New packages: libbeato bwtool. (#8681)
2018-07-11 10:33:44 -05:00
byobu
byobu: update package (#8628)
2018-07-02 15:17:39 -05:00
bzip2
Change bzip2 download URL (#8976)
2018-08-14 10:46:15 -06:00
c-blosc
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c-lime
…
caffe
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cairo
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cairomm
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
caliper
caliper: update to use unwind virtual package
2018-08-06 22:01:50 -07:00
callpath
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camellia
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
candle-benchmarks
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cantera
…
canu
…
cap3
…
cares
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cask
…
casper
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
catalyst
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catch
…
cbench
…
cblas
CBLAS: Don't hardcode BLAS library name (#9017)
2018-08-18 11:19:24 -05:00
cbtf
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cbtf-argonavis
libmonitor: update version and add variant to configure (#8834)
2018-08-03 14:00:12 -04:00
cbtf-argonavis-gui
qtgraph and cbtf-argonavis create proper library paths in modules (#8797)
2018-08-17 15:58:08 -07:00
cbtf-krell
libmonitor: update version and add variant to configure (#8834)
2018-08-03 14:00:12 -04:00
cbtf-lanl
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ccache
…
cctools
…
cdbfasta
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cdd
…
cddlib
…
cdhit
…
cdo
…
ceed
Balay/petsc remove boost dependency (#8508)
2018-06-24 10:52:14 -05:00
cereal
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ceres-solver
votca*: update dependencies (#8757)
2018-07-19 11:06:16 -05:00
cfitsio
Add CFITSIO 3.450 (#8602)
2018-06-28 11:28:22 -05:00
cgal
cgal: added version 4.12 (#8252)
2018-05-23 10:11:03 -05:00
cgm
…
cgns
…
charliecloud
add Charliecloud 0.9.1 (#8902)
2018-08-06 17:43:00 -05:00
charm
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
check
…
chlorop
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
chombo
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
cistem
…
cityhash
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
clamr
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
clapack
Fix missing makefile variable in clapack package (#9016)
2018-08-18 11:19:40 -05:00
cleaveland4
…
cleverleaf
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
clfft
…
clhep
…
clingo
compiler flags: add cxx98 standard support (#7601)
2018-06-08 13:49:31 -07:00
cloc
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cloog
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cloverleaf
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cloverleaf3d
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clustalo
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clustalw
…
cmake
Add new versions for cmake. (#8955)
2018-08-11 08:38:20 -05:00
cmocka
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cmor
…
cnmem
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cnpy
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cntk
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cntk1bitsgd
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
codar-cheetah
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
coevp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cohmm
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
coinhsl
…
colm
New colm, ragel packages (#7867)
2018-04-23 10:50:58 -05:00
colordiff
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comd
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
compiz
…
compositeproto
…
conduit
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
constype
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converge
…
coreutils
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
corset
…
cosmomc
…
cosp2
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
cp2k
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
cppad
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
cppcheck
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
cpprestsdk
…
cppunit
…
cppzmq
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cpu-features
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cpuinfo
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cram
…
cryptopp
Add cryptopp 7.0.0 (#8224)
2018-05-21 11:52:25 -05:00
cscope
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csdp
…
ctffind
…
cub
…
cube
Update scorep and friends to newest versions (#8171)
2018-05-17 19:52:01 -05:00
cubelib
scorep: make optional packages variants (#9011)
2018-08-18 11:25:05 -05:00
cubew
scorep: make optional packages variants (#9011)
2018-08-18 11:25:05 -05:00
cuda
CUDA 9.2 (#8238)
2018-05-22 12:45:47 +02:00
cuda-memtest
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
cudnn
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
cufflinks
…
cups
…
curl
Add cURL 7.60.0 (#8210)
2018-05-20 15:04:28 -05:00
cvs
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
czmq
flux: update flux-core package and add a flux-sched package (#8818)
2018-08-02 16:20:55 -04:00
dakota
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daligner
…
damageproto
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damselfly
tests: add checks and tests for consistent version() arguments
2018-07-25 23:10:10 -07:00
darshan-runtime
…
darshan-util
…
dash
…
datamash
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
dataspaces
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
davix
Add new package: davix (#8376)
2018-06-06 18:54:07 -05:00
dbus
Add version 1.12.8 to dbus (#8949)
2018-08-11 09:21:20 -05:00
dealii
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
dealii-parameter-gui
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
deconseq-standalone
…
dejagnu
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
delly2
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
denovogear
…
dia
Dia needs access to gettext and pkg-config. (#8840)
2018-08-01 19:12:17 -05:00
dialign-tx
…
diamond
DIAMOND: Add version 0.9.20 (#7847)
2018-04-21 09:57:06 -05:00
diffsplice
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direnv
…
discovar
…
discovardenovo
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dislin
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
dlpack
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
dmd
dmd: a new package. (#8826)
2018-08-02 22:07:01 -05:00
dmlc-core
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
dmtcp
Add package DMTCP (#8808)
2018-07-26 09:47:55 -05:00
dmxproto
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docbook-xml
…
docbook-xsl
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dos2unix
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double-conversion
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doxygen
…
dri2proto
…
dri3proto
…
dsdp
…
dsrc
…
dtcmp
…
dyninst
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ea-utils
…
easybuild
…
ebms
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
eccodes
…
eclipse-gcj-parser
new package: pdftk (#8166)
2018-06-12 11:25:20 -07:00
ecp-proxy-apps
…
ed
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
editres
…
eigen
…
elasticsearch
Added elastic search (#8424)
2018-06-07 23:17:07 -05:00
elemental
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
elfutils
elfutils: update version and add variants (#8891)
2018-08-07 14:04:05 -05:00
elk
…
elpa
elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512)
2018-06-22 07:52:40 -05:00
emacs
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
emboss
Skip update check. (#8683)
2018-07-27 09:57:05 -05:00
encodings
…
environment-modules
…
eospac
clean up version names (#8368)
2018-06-04 15:04:12 -05:00
er
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
es
…
esmf
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
essl
Unit test fixes
2018-07-25 23:10:10 -07:00
ethminer
…
etsf-io
…
everytrace
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
everytrace-example
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
evieext
…
exabayes
…
examinimd
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
exampm
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
exasp2
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
exmcutils
…
exodusii
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
exonerate
…
expat
libexpat: Fix for older systems, move to GitHub (#8135)
2018-05-17 20:04:57 -05:00
expect
…
express
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
extrae
…
exuberant-ctags
…
f90cache
…
fabtests
fabtests: new package (#7837)
2018-04-25 10:29:29 -05:00
falcon
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
farmhash
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
fast-gbs
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
fast-global-file-status
add fgfs variant to stat and develop version (#8919)
2018-08-09 10:56:08 -05:00
fasta
Add package for fasta (#8953)
2018-08-11 11:38:31 -05:00
fastjar
…
fastmath
…
fastme
…
fastphase
…
fastq-screen
…
fastqc
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
fastqvalidator
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
fasttree
…
fastx-toolkit
…
fenics
…
fermi
…
fermikit
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
fermisciencetools
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
ferret
…
ffmpeg
…
fftw
fftw: version bump (#8723)
2018-07-17 11:11:19 -05:00
fimpute
…
findutils
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
fio
…
fish
…
fixesproto
…
flac
…
flang
Package/flang: Updated to use own version of llvm (#8766)
2018-08-03 20:35:09 -04:00
flann
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
flash
…
flatbuffers
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00
flecsale
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
flecsi
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
flex
flex: use 2.6.3. by default (#8154)
2018-05-17 13:58:29 -07:00
flint
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
flit
…
fltk
…
flux-core
flux: update flux-core package and add a flux-sched package (#8818)
2018-08-02 16:20:55 -04:00
flux-sched
flux: update flux-core package and add a flux-sched package (#8818)
2018-08-02 16:20:55 -04:00
fluxbox
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
fmt
…
foam-extend
install_tree: symlink handling and add 'ignore' option (#9019)
2018-08-17 22:08:38 -04:00
folly
…
font-adobe-75dpi
…
font-adobe-100dpi
…
font-adobe-utopia-75dpi
…
font-adobe-utopia-100dpi
…
font-adobe-utopia-type1
…
font-alias
…
font-arabic-misc
…
font-bh-75dpi
…
font-bh-100dpi
…
font-bh-lucidatypewriter-75dpi
…
font-bh-lucidatypewriter-100dpi
…
font-bh-ttf
…
font-bh-type1
…
font-bitstream-75dpi
…
font-bitstream-100dpi
…
font-bitstream-speedo
…
font-bitstream-type1
…
font-cronyx-cyrillic
…
font-cursor-misc
…
font-daewoo-misc
…
font-dec-misc
…
font-ibm-type1
…
font-isas-misc
…
font-jis-misc
…
font-micro-misc
…
font-misc-cyrillic
…
font-misc-ethiopic
…
font-misc-meltho
…
font-misc-misc
…
font-mutt-misc
…
font-schumacher-misc
…
font-screen-cyrillic
…
font-sony-misc
…
font-sun-misc
…
font-util
…
font-winitzki-cyrillic
…
font-xfree86-type1
…
fontcacheproto
…
fontconfig
…
fontsproto
…
fonttosfnt
…
fp16
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
fpc
…
fr-hit
…
freebayes
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
freeglut
freeglut: new package (#7820)
2018-04-18 19:49:42 -05:00
freetype
freetype: adding subdir to cpath for deps (#7818)
2018-04-19 09:00:49 -05:00
fseq
…
fsl
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
fslsfonts
…
fstobdf
…
ftgl
FTGL package workarounds (#8812)
2018-07-26 15:54:46 -05:00
funhpc
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
fyba
Fix compilation of FYBA with GCC 6 (#8273)
2018-05-26 10:36:34 -05:00
gapbs
…
gapcloser
…
gapfiller
…
gasnet
…
gatk
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
gaussian
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
gawk
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gblocks
…
gcc
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gccmakedep
…
gccxml
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gconf
…
gcta
…
gdal
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
gdb
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gdbm
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gdk-pixbuf
…
gdl
GDL and missing dependencies (#8283)
2018-06-08 08:35:28 -05:00
geant4
…
gearshifft
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
gemmlowp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
genemark-et
…
genomefinisher
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
genometools
Aegean: new package (#8113)
2018-05-14 11:10:19 -05:00
geopm
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
geos
Add Python/Ruby bindings to GEOS package (#8218)
2018-05-21 15:59:50 -05:00
gettext
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gflags
…
ghost
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ghostscript
…
ghostscript-fonts
…
giflib
…
git
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
git-imerge
…
git-lfs
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gl2ps
…
glew
glew: adding gl dependency (#7817)
2018-04-18 17:58:45 -05:00
glfmultiples
…
glib
glib: patch for rhel6, centos6, and sl6 (#8947)
2018-08-16 08:43:56 -07:00
glibmm
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
glimmer
…
glm
…
global
…
globalarrays
Update GlobalArrays package to new releases (#7840)
2018-05-21 20:06:29 -05:00
globus-toolkit
…
glog
Glog: make is a function (#8648)
2018-07-06 07:15:47 -05:00
gloo
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
glpk
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
glproto
…
glvis
Add libs attribute to mesa and mesa-glu packages (#8904)
2018-08-07 10:18:05 +02:00
gmake
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gmap-gsnap
…
gmime
…
gmp
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gmsh
gmsh: add netgen and tetgen (#8060)
2018-05-11 14:22:12 +02:00
gnat
…
gnu-prolog
…
gnupg
…
gnuplot
gnuplot: add 5.2.2 (#7831)
2018-04-21 10:24:36 -05:00
gnutls
…
go
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
go-bootstrap
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
gobject-introspection
init: factor paths out of spack/__init__.py and into spack.paths module
2018-05-17 14:10:30 -07:00
googletest
googletest: add a shared variant for all supported versions (#8373)
2018-06-07 10:34:37 -05:00
gotcha
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gource
…
gperf
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gperftools
gperftools@2.7: new version; homepage, URL, hash updates (#9010)
2018-08-16 19:38:02 -05:00
gplates
gplates: new package (#8336)
2018-06-13 08:57:52 -05:00
grackle
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
gradle
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
grandr
…
graph500
…
graphicsmagick
GDL and missing dependencies (#8283)
2018-06-08 08:35:28 -05:00
graphlib
…
graphmap
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
graphviz
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
grass
grass improvement: specify proj data directory (#8984)
2018-08-15 09:54:08 -05:00
grib-api
…
grnboost
New package: GRNBoost (#8763)
2018-08-02 13:46:36 -04:00
groff
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gromacs
Add version 5.1.5 for gromacs. (#8948)
2018-08-11 09:21:32 -05:00
gsl
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gslib
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gtkmm
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
gtkorvo-atl
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gtkorvo-cercs-env
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gtkorvo-dill
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
gtkorvo-enet
Gtkorvo updates (#8663)
2018-07-10 12:50:10 -05:00
gtkplus
…
gts
…
guidance
…
guile
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
gurobi
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
h5hut
…
h5part
…
h5utils
…
h5z-zfp
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hacckernels
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hadoop
Added the latest versions of a few packages (#7910)
2018-04-26 14:46:45 +02:00
halc
halc: Create new package. (#8795)
2018-07-26 15:55:43 -05:00
hapcut2
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hapdip
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
haploview
…
harfbuzz
…
harminv
…
hdf
…
hdf5
hdf5: Fix build with %gcc@8 (#8788)
2018-07-26 15:58:00 -05:00
hdf5-blosc
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
help2man
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
hepmc
…
heppdt
…
hic-pro
HiC-pro depends on python+ucs4. (#8564)
2018-06-25 12:04:00 -05:00
highfive
…
highwayhash
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hiop
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hisat2
…
hisea
hisea: new package (#8112)
2018-05-14 09:46:54 -05:00
hmmer
hmmer: added version 3.2.1 & updated URL (#8787)
2018-07-26 10:07:55 -05:00
hoomd-blue
All git URLs end in .git
2018-07-25 23:10:10 -07:00
hpccg
…
hpctoolkit
All git URLs end in .git
2018-07-25 23:10:10 -07:00
hpctoolkit-externals
All git URLs end in .git
2018-07-25 23:10:10 -07:00
hpgmg
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hpl
…
hpx
…
hpx5
…
hsakmt
…
hstr
…
htop
…
htslib
Add samtools 1.9 (#8961)
2018-08-12 18:54:50 -05:00
httpie
…
hub
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
hunspell
…
hwloc
…
hybpiper
…
hydra
…
hydrogen
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
hypre
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
i3
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
ibmisc
…
iceauth
…
icedtea
…
icet
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
ico
…
icu4c
…
id3lib
…
idba
…
igraph
…
igv
…
igvtools
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
ilmbase
…
image-magick
…
imake
…
imp
A new pacakge: IMP. (#7859)
2018-04-21 13:08:44 -05:00
impute2
…
infernal
…
inputproto
…
intel
…
intel-daal
…
intel-gpu-tools
…
intel-ipp
…
intel-mkl
…
intel-mkl-dnn
…
intel-mpi
…
intel-parallel-studio
…
intel-tbb
intel-tbb: Add tm variant to disable transactional memory. (#8799)
2018-07-25 23:14:17 -07:00
intel-xed
All git URLs end in .git
2018-07-25 23:10:10 -07:00
intltool
intltool requires patching for newer perl versions (#8061)
2018-05-08 17:53:50 -05:00
ior
…
iozone
…
iperf2
Packaged iperf2 (#8765)
2018-07-19 17:55:06 -05:00
iperf3
Packaged iperf3 (#8762)
2018-07-19 16:02:55 -05:00
ipopt
…
isaac
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
isaac-server
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
isl
…
itstool
…
itsx
…
jags
…
jansson
…
jasper
Add JasPer 2.0.14 (#8207)
2018-05-26 10:37:48 -05:00
jbigkit
…
jchronoss
…
jdk
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
jellyfish
Remove unnecessary version-specific URL overrides (#8693)
2018-07-12 07:28:11 +02:00
jemalloc
…
jmol
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
jq
…
json-c
gplates: new package (#8336)
2018-06-13 08:57:52 -05:00
json-cwx
…
json-glib
…
jsoncpp
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
judy
…
julia
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
k8
…
kahip
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
kaiju
A new pacakge: Kaiju. (#8111)
2018-05-14 11:07:00 -05:00
kaks-calculator
…
kaldi
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
kallisto
…
kbproto
…
kdiff3
…
kealib
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
kentutils
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
kim-api
kim-api: initial commit (#8873)
2018-08-04 16:47:35 -05:00
kmergenie
…
kokkos
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
kraken
…
krb5
Add package wireshark and dependencies (#8024)
2018-05-06 09:32:06 -05:00
krims
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
kripke
Update broken codesign.llnl.gov urls (#8880)
2018-08-03 10:25:10 -05:00
kvasir-mpl
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
kvtree
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
laghos
Update homepage for laghos (#8864)
2018-08-02 13:03:52 -04:00
lammps
All git URLs end in .git
2018-07-25 23:10:10 -07:00
last
…
latte
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
launchmon
…
lazyten
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
lbann
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
lbxproxy
…
lcals
Update broken codesign.llnl.gov urls (#8880)
2018-08-03 10:25:10 -05:00
lcms
Add lcms 2.9 (#8219)
2018-05-21 15:59:11 -05:00
ldc
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
ldc-bootstrap
…
legion
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
leveldb
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
lftp
…
libaec
Use GitLab's API endpoint for fetching a git snapshot. (#7881)
2018-04-26 16:40:11 -05:00
libaio
…
libapplewm
…
libarchive
…
libassuan
…
libatomic-ops
…
libbeagle
libbeagle: add java dependency so jni hooks get built (#8524)
2018-07-22 17:16:43 -05:00
libbeato
New packages: libbeato bwtool. (#8681)
2018-07-11 10:33:44 -05:00
libbsd
…
libbson
…
libcanberra
…
libcap
…
libceed
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libcerf
…
libcheck
…
libcint
libcint: New version 3.0.12 (#9003)
2018-08-16 15:59:26 -05:00
libcircle
…
libconfig
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
libcroco
…
libctl
…
libdivsufsort
…
libdmx
…
libdrm
…
libdwarf
libdwarf: remove use of hide_files()
2018-08-02 19:00:52 -07:00
libedit
…
libelf
…
libemos
…
libepoxy
…
libev
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
libevent
…
libevpath
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libfabric
Libfabric: updating fabrics & adding deps (#7838)
2018-04-25 10:35:36 -05:00
libffi
…
libffs
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libfontenc
…
libfs
…
libgcrypt
…
libgd
…
libgeotiff
Add libgeotiff package (#8203)
2018-05-20 15:02:49 -05:00
libgit2
…
libgpg-error
…
libgpuarray
…
libgridxc
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
libgtextutils
…
libharu
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libhio
added line 43 (#8369)
2018-06-04 15:04:45 -05:00
libiberty
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libice
…
libiconv
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libint
…
libjpeg
Update the hash of libjpeg v9c. (#8230)
2018-05-21 15:53:55 -05:00
libjpeg-turbo
libjpeg-turbo: updated checksums and added autoreconf for older versions (#8411)
2018-06-06 16:18:03 -05:00
libksba
…
liblbxutil
…
liblockfile
…
libmatheval
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libmaxminddb
Add package wireshark and dependencies (#8024)
2018-05-06 09:32:06 -05:00
libmesh
…
libmng
…
libmongoc
libmongoc: Fix build (#9012)
2018-08-17 08:22:30 -05:00
libmonitor
libmonitor: update version and add variant to configure (#8834)
2018-08-03 14:00:12 -04:00
libnbc
…
libnl
libnl: new package (#7833)
2018-04-25 10:33:01 -05:00
libnova
libnova: new package (#8666)
2018-07-09 16:16:09 -05:00
libogg
…
liboldx
…
libpcap
…
libpciaccess
…
libpfm4
…
libpipeline
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
libpng
…
libpsl
…
libpthread-stubs
…
libquo
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
librom
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libshm
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libsigcpp
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
libsigsegv
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libsm
…
libsodium
…
libspatialindex
…
libsplash
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
libssh
add variants and conflicts for curl (#7804)
2018-04-19 07:23:16 -05:00
libssh2
…
libsvm
…
libszip
…
libtermkey
…
libtiff
Add libtiff 4.0.9 (#8201)
2018-05-20 15:01:11 -05:00
libtool
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libunistring
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
libunwind
libunwind: add version 1.3-rc1 and variant xz (#8989)
2018-08-17 08:22:04 -05:00
libuuid
…
libuv
…
libvorbis
…
libvterm
…
libwebsockets
…
libwindowswm
…
libx11
glvis@3.3: new package (#7166)
2018-04-17 07:48:48 -05:00
libxau
…
libxaw
…
libxaw3d
…
libxc
…
libxcb
…
libxcomposite
…
libxcursor
…
libxdamage
…
libxdmcp
…
libxevie
…
libxext
…
libxfixes
…
libxfont
…
libxfont2
…
libxfontcache
…
libxft
…
libxi
…
libxinerama
…
libxkbcommon
…
libxkbfile
…
libxkbui
…
libxml2
Add libxml2 2.9.8 (#8211)
2018-05-20 15:04:47 -05:00
libxmu
…
libxp
…
libxpm
…
libxpresent
…
libxprintapputil
…
libxprintutil
…
libxrandr
…
libxrender
…
libxres
…
libxscrnsaver
…
libxshmfence
libxshmfence: Update to 1.3 (#8667)
2018-07-10 07:58:44 -05:00
libxslt
…
libxsmm
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
libxstream
…
libxt
shoremap: new package (#7343)
2018-05-12 08:22:45 +02:00
libxtrap
…
libxtst
…
libxv
…
libxvmc
…
libxxf86dga
…
libxxf86misc
…
libxxf86vm
…
libyogrt
…
libzip
…
likwid
LIKWID: Switch to perf_event backend to allow user installations but with limited features (#8886)
2018-08-06 09:21:30 -05:00
linkphase3
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
linux-headers
…
listres
…
llvm
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
llvm-openmp-ompt
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
lmdb
…
lmod
lmod: add version 7.8 (#8838)
2018-07-31 23:19:41 -07:00
lndir
…
log4cplus
Add new versions for log4cplus. (#8621)
2018-07-03 10:08:22 -05:00
log4cxx
…
loki
A new package: loki. (#7908)
2018-04-26 08:37:03 -05:00
lordec
lordec: Create new package. (#8095)
2018-05-14 16:56:49 -05:00
lrslib
…
lrzip
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
lsof
…
ltrace
…
lua
Add unzip runtime dependency to lua package (#8831)
2018-08-05 13:26:22 -05:00
lua-bitlib
…
lua-jit
…
lua-lpeg
…
lua-luafilesystem
…
lua-luaposix
…
lua-mpack
…
luit
…
lulesh
Update broken codesign.llnl.gov urls (#8880)
2018-08-03 10:25:10 -05:00
lumpy-sv
…
lwgrp
…
lwm2
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
lz4
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
lzma
…
lzo
…
m4
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
macsio
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mad-numdiff
All git URLs end in .git
2018-07-25 23:10:10 -07:00
mafft
…
magics
…
magma
…
makedepend
…
mallocmc
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
man-db
…
manta
manta: Create new package (#8043)
2018-05-07 17:22:43 -05:00
maq
…
mariadb
…
masa
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
masurca
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
matio
…
matlab
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
maven
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
maverick
…
mawk
…
mbedtls
…
mc
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
mcl
…
mdtest
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
med
add MoFEM packages (#8700)
2018-07-22 15:26:30 -05:00
meep
…
mefit
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
megahit
A new package: megahit. (#8471)
2018-06-14 13:45:12 -05:00
memaxes
…
meme
…
memkind
Create new package: memkind (#8242)
2018-05-22 13:37:03 -05:00
meraculous
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mercurial
…
mesa
Add libs attribute to mesa and mesa-glu packages (#8904)
2018-08-07 10:18:05 +02:00
mesa-glu
Add libs attribute to mesa and mesa-glu packages (#8904)
2018-08-07 10:18:05 +02:00
meshkit
…
meson
…
mesquite
…
metabat
metabat: Create new package (#7991)
2018-05-06 10:56:03 -05:00
metaphysicl
…
metasv
…
metis
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
mfem
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
microbiomeutil
…
minced
…
mindthegap
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
miniaero
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
miniamr
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
miniasm
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
miniconda2
Bump miniconda to 4.5.4. (#8435)
2018-06-10 15:15:43 -05:00
miniconda3
Bump miniconda to 4.5.4. (#8435)
2018-06-10 15:15:43 -05:00
minife
…
minighost
…
minigmg
…
minimap2
…
minimd
…
miniqmc
…
minisign
…
minismac2d
…
minitri
…
minixyce
…
minuit
Added minuit package (#8536)
2018-06-22 11:27:25 -05:00
mira
…
mirdeep2
Package/mirdeep/fix for new url take2 (#8247)
2018-05-23 07:25:42 -05:00
mitofates
mitofates: more deps and a patch to make it functional (#8686)
2018-07-12 10:23:22 +02:00
mitos
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mkfontdir
…
mkfontscale
…
mlhka
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
moab
add necessary dependence on lapacak, and fix ld_flags for blas (#8776)
2018-07-22 16:32:47 -05:00
modern-wheel
…
mofem-cephas
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mofem-fracture-module
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mofem-minimal-surface-equation
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mofem-users-modules
add MoFEM packages (#8700)
2018-07-22 15:26:30 -05:00
molcas
…
mono
Add a new version 5.4.1.7 for mono. (#7866)
2018-04-23 07:31:29 -05:00
mosh
…
mothur
mothur: mpi not used (#8706)
2018-07-13 20:31:25 -05:00
motif
…
motioncor2
…
mount-point-attributes
add fgfs variant to stat and develop version (#8919)
2018-08-09 10:56:08 -05:00
mozjs
…
mpark-variant
…
mpc
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
mpe2
…
mpest
…
mpfr
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
mpibash
…
mpiblast
…
mpich
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mpifileutils
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
mpilander
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mpileaks
…
mpip
…
mpir
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
mpix-launch-swift
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
mrbayes
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mrnet
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
mrtrix3
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
mscgen
…
msgpack-c
Add msgpack-c 3.0.1 (#8264)
2018-05-24 10:47:31 -05:00
mshadow
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
multitail
…
multiverso
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
mummer
…
mumps
Change MUMPS to allow it to build with clang+xlf compiler combination (#8388)
2018-08-02 14:23:37 -04:00
munge
…
muparser
…
muscle
…
muse
…
muster
…
mvapich2
Bump mvapich2 to the latest v2.3 release. (#8892)
2018-08-06 12:03:33 +02:00
mxml
…
mxnet
…
nag
…
nalu
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
nalu-wind
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
namd
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
nano
…
nanoflann
…
nanopb
A new package: nanopb. (#7981)
2018-05-03 10:12:37 -05:00
nasm
nasm: Fix compilation with GCC 8 (#8307)
2018-05-29 10:28:17 -05:00
nauty
…
ncbi-magicblast
New package ncbi-magicblast (#8517)
2018-06-22 17:48:32 -05:00
ncbi-rmblastn
…
ncbi-toolkit
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
nccl
…
nccmp
…
ncdu
…
ncftp
…
ncl
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
nco
nco: Find NetCDF (#8159)
2018-05-18 07:51:21 -05:00
ncurses
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
ncview
…
ndiff
…
nek5000
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
nekbone
fix for issue #8845 (#8988)
2018-08-16 13:22:44 -06:00
nekcem
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
nektar
Adding nektar++ package (#8167)
2018-06-01 09:30:06 -05:00
neovim
package neovim: add info for version 0.3.1 (#8866)
2018-08-02 13:04:59 -04:00
netcdf
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
netcdf-cxx
…
netcdf-cxx4
netcdf-cxx4: Update to use CPPFLAGS (#8148)
2018-05-21 16:23:35 -05:00
netcdf-fortran
netcdf-fortran: enforce autoreconf when building with NAG. (#8844)
2018-08-02 08:32:20 -05:00
netgauge
…
netgen
netgen should depend on zlib (#8473)
2018-06-14 13:43:43 -05:00
netlib-lapack
Small patch for netlib-lapack. (#8854)
2018-08-01 18:55:07 -05:00
netlib-scalapack
…
netlib-xblas
…
nettle
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
neuron
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
nextflow
…
nfft
nfft: added version 3.4.1 Moved package to github (#8099)
2018-05-12 17:25:28 +02:00
nghttp2
…
nginx
…
ngmlr
…
ninja
…
ninja-fortran
…
nlohmann-json
…
nlopt
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
nmap
Added nmap version 7.70 (#8606)
2018-06-28 15:32:43 -05:00
nnvm
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
node-js
…
notmuch
…
npb
…
npm
…
npth
…
nspr
…
numactl
numactl: fix build with glibc-2.26 (#8615)
2018-06-29 14:41:52 -05:00
numdiff
…
nut
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
nwchem
nwchem: add link type to python dep (#8759)
2018-07-19 12:03:40 -05:00
ocaml
…
occa
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
oce
style: make core comply with pep8-naming
2018-07-19 00:41:36 -07:00
oclint
…
oclock
…
octave
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
octave-optim
…
octave-splines
…
octave-struct
…
octopus
…
of-adios-write
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
of-precice
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
omega-h
omega-h: fix -std=c++11 build error (#8543)
2018-06-23 07:25:33 -05:00
ompss
…
ompt-openmp
…
oniguruma
…
ont-albacore
added albacore version 2.3.1 (#8513)
2018-06-19 11:16:41 -05:00
opa-psm2
…
opam
…
opari2
Update scorep and friends to newest versions (#8171)
2018-05-17 19:52:01 -05:00
openbabel
…
openblas
openblas: add version 0.3.2 (#8833)
2018-08-01 19:14:48 -05:00
opencoarrays
…
opencv
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
openexr
…
openfast
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openfoam-com
install_tree: symlink handling and add 'ignore' option (#9019)
2018-08-17 22:08:38 -04:00
openfoam-org
install_tree: symlink handling and add 'ignore' option (#9019)
2018-08-17 22:08:38 -04:00
openfst
Add far variant to openfst package (#8299)
2018-05-28 13:45:56 -05:00
opengl
Add libs attribute to mesa and mesa-glu packages (#8904)
2018-08-07 10:18:05 +02:00
openglu
Add libs attribute to mesa and mesa-glu packages (#8904)
2018-08-07 10:18:05 +02:00
openjpeg
…
openmc
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openmpi
Fix openmpi to work with slurm/pmi and mxm (#8427)
2018-08-02 14:06:39 -04:00
opennurbs
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openpmd-api
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openscenegraph
…
openslide
A new package: openslide. (#7906)
2018-04-26 07:17:15 +02:00
openspeedshop
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openspeedshop-utils
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
openssh
…
openssl
openssl: add new version 1.0.2o (#8486)
2018-06-15 09:54:52 +02:00
opium
…
opus
…
orfm
…
orthofinder
…
orthomcl
…
osu-micro-benchmarks
…
otf
…
otf2
Update scorep and friends to newest versions (#8171)
2018-05-17 19:52:01 -05:00
p4est
…
p7zip
…
pacbio-daligner
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pacbio-damasker
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pacbio-dazz-db
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pacbio-dextractor
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pagit
…
pagmo
…
paml
…
panda
…
pandaseq
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
pango
…
pangomm
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
papi
papi: Update to 5.6.0 and fix build with %gcc@8 (#8796)
2018-07-26 10:02:07 -05:00
papyrus
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
paradiseo
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
parallel
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
parallel-netcdf
Turning off parallel during make install for parallel-netcdf. (#8186)
2018-05-18 12:12:43 -05:00
paraver
…
paraview
paraview: set PARAVIEW_VTK_DIR in spack_env and run_env (#8308)
2018-05-30 10:35:39 -05:00
parmetis
…
parmgridgen
…
parquet
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00
parsimonator
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
parsplice
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
partitionfinder
…
patch
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
patchelf
…
pathfinder
…
pax-utils
…
pbbam
pbbam: new package (#8365)
2018-06-07 22:44:30 -05:00
pbmpi
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pcma
…
pcre
Add PCRE 8.42 (#8213)
2018-05-20 15:05:29 -05:00
pcre2
Add PCRE2 10.31 (#8214)
2018-05-20 15:05:47 -05:00
pdf2svg
new package: py-weblogo (#7886)
2018-04-24 19:31:37 -07:00
pdftk
new package: pdftk (#8166)
2018-06-12 11:25:20 -07:00
pdsh
…
pdt
Add new versions for TAU and PDT package (#8497)
2018-06-17 17:21:00 -05:00
pegtl
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
pennant
…
percept
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
perl
Make read only source file writeable in perl before patch to avoid failures on lustre filesystem. (#8764)
2018-07-22 16:51:59 -05:00
perl-algorithm-diff
…
perl-app-cmd
…
perl-array-utils
…
perl-b-hooks-endofscope
…
perl-bio-perl
…
perl-bit-vector
…
perl-cairo
…
perl-capture-tiny
…
perl-carp-clan
…
perl-class-data-inheritable
…
perl-class-inspector
…
perl-class-load
…
perl-class-load-xs
…
perl-compress-raw-bzip2
A new perl package: perl-io-compress. (#8566)
2018-06-25 12:02:04 -05:00
perl-compress-raw-zlib
A new perl package: perl-io-compress. (#8566)
2018-06-25 12:02:04 -05:00
perl-contextual-return
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
perl-cpan-meta-check
…
perl-data-optlist
…
perl-data-stag
…
perl-dbd-mysql
…
perl-dbfile
…
perl-dbi
…
perl-devel-cycle
…
perl-devel-globaldestruction
…
perl-devel-overloadinfo
…
perl-devel-stacktrace
…
perl-digest-md5
…
perl-dist-checkconflicts
…
perl-encode-locale
…
perl-eval-closure
…
perl-exception-class
…
perl-exporter-tiny
…
perl-extutils-depends
…
perl-extutils-makemaker
…
perl-extutils-pkgconfig
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
perl-file-copy-recursive
…
perl-file-listing
…
perl-file-pushd
…
perl-file-sharedir-install
…
perl-file-slurp-tiny
…
perl-file-slurper
…
perl-file-which
…
perl-font-ttf
…
perl-gd
…
perl-gd-graph
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
perl-gd-text
…
perl-graph
…
perl-graph-readwrite
…
perl-html-parser
…
perl-html-tagset
…
perl-http-cookies
…
perl-http-daemon
…
perl-http-date
…
perl-http-message
…
perl-http-negotiate
…
perl-inline
…
perl-inline-c
…
perl-intervaltree
…
perl-io-compress
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
perl-io-html
…
perl-io-sessiondata
…
perl-io-socket-ssl
…
perl-io-string
…
perl-json
…
perl-libwww-perl
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
perl-list-moreutils
…
perl-log-log4perl
…
perl-lwp
…
perl-lwp-mediatypes
…
perl-lwp-protocol-https
…
perl-math-cdf
…
perl-math-cephes
perl-math-cephes: new package (#8671)
2018-07-11 12:40:39 -05:00
perl-math-matrixreal
…
perl-module-build
…
perl-module-implementation
…
perl-module-runtime
…
perl-module-runtime-conflicts
…
perl-moose
…
perl-mozilla-ca
…
perl-mro-compat
…
perl-namespace-clean
…
perl-net-http
…
perl-net-scp-expect
…
perl-net-ssleay
…
perl-package-deprecationmanager
…
perl-package-stash
…
perl-package-stash-xs
…
perl-padwalker
…
perl-parallel-forkmanager
…
perl-params-util
…
perl-parse-recdescent
…
perl-pdf-api2
…
perl-pegex
…
perl-perl6-slurp
perl6-slurp: new package (#8672)
2018-08-09 10:35:54 -05:00
perl-perlio-gzip
…
perl-perlio-utf8-strict
…
perl-soap-lite
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
perl-star-fusion
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
perl-statistics-descriptive
…
perl-statistics-pca
perl-statistics-pca: Create new package (#7796)
2018-04-17 13:30:12 -05:00
perl-sub-exporter
…
perl-sub-exporter-progressive
…
perl-sub-identify
…
perl-sub-install
…
perl-sub-name
…
perl-sub-uplevel
…
perl-svg
…
perl-swissknife
…
perl-task-weaken
…
perl-term-readkey
…
perl-test-cleannamespaces
…
perl-test-deep
…
perl-test-differences
…
perl-test-exception
…
perl-test-fatal
…
perl-test-memory-cycle
…
perl-test-most
…
perl-test-needs
…
perl-test-requires
…
perl-test-requiresinternet
…
perl-test-warn
…
perl-test-warnings
…
perl-text-csv
…
perl-text-diff
…
perl-text-simpletable
…
perl-text-soundex
perl-text-soundex: new package (#8279)
2018-05-25 14:00:12 -05:00
perl-text-unidecode
…
perl-time-hires
…
perl-time-piece
…
perl-try-tiny
…
perl-uri
…
perl-uri-escape
…
perl-version
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
perl-want
…
perl-www-robotrules
…
perl-xml-libxml
…
perl-xml-parser
…
perl-xml-parser-lite
…
perl-xml-simple
…
perl-yaml-libyaml
…
petsc
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pexsi
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
pfft
…
pflotran
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pfunit
pfunit: update (#7994)
2018-05-03 17:02:20 -05:00
pgdspider
…
pgi
Bump pgi to 18.4. (#7980)
2018-05-03 10:12:17 -05:00
pgmath
Package/flang: Updated to use own version of llvm (#8766)
2018-08-03 20:35:09 -04:00
phantompeakqualtools
…
phast
New package: phast (#7993)
2018-06-04 13:22:47 -05:00
phasta
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
phist
Phist 1.6.1 (#8933)
2018-08-10 12:53:18 -05:00
phylip
…
picard
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
pidx
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pigz
Use GitHub URL for pigz, supports > 1 release (#8339)
2018-05-31 20:28:08 -05:00
pilon
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
pindel
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
piranha
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
pism
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pixman
Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449)
2018-06-22 08:03:47 -05:00
pkg-config
…
pkgconf
Add pkgconf 1.4.2 (#8256)
2018-05-23 13:27:39 -05:00
planck-likelihood
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
plasma
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
platypus
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
plink
plink: new source version 1.9-beta5 (#8076)
2018-05-12 18:38:22 -05:00
plplot
GDL and missing dependencies (#8283)
2018-06-08 08:35:28 -05:00
plumed
plumed: added versions 2.4.1 and 2.3.5 (#8297)
2018-05-28 08:01:51 -05:00
pmgr-collective
…
pmix
pmix: add 1.2.5 and 2.0.3 bug fix releases (#8097)
2018-05-11 21:58:29 -05:00
pnfft
Added gsl dependency to pnfft (#8255)
2018-05-24 16:24:47 -05:00
pngwriter
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pnmpi
…
poamsa
…
pocl
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
polymake
…
poppler
All git URLs end in .git
2018-07-25 23:10:10 -07:00
poppler-data
Add missing dependencies to poppler package (#8220)
2018-05-21 15:58:51 -05:00
porta
…
portage
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
postgresql
…
ppl
…
prank
…
precice
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
presentproto
…
preseq
…
price
…
primer3
…
prinseq-lite
prinseq-lite: Create new package (#7873)
2018-04-23 16:11:27 -05:00
printproto
…
prng
Add new package: prng (#8396)
2018-06-06 12:07:16 -05:00
probconsrna
…
prodigal
…
proj
Add PROJ 5.0.1 (#8233)
2018-05-23 13:29:08 -05:00
protobuf
Add 3.5.2; Add optional cpp implementation enable for py-protobuf (#8069)
2018-05-09 20:52:39 -05:00
proxymngr
…
pruners-ninja
…
ps-lite
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
psi4
…
pslib
GDL and missing dependencies (#8283)
2018-06-08 08:35:28 -05:00
psm
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
psmc
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pstreams
…
pugixml
…
pumi
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
pv
pv: initial commit (#8147)
2018-05-17 15:40:54 -05:00
pvm
…
pxz
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
py-3to2
…
py-4suite-xml
…
py-abipy
…
py-adios
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-affine
…
py-alabaster
…
py-apache-libcloud
…
py-apipkg
…
py-appdirs
…
py-appnope
…
py-apscheduler
…
py-argcomplete
…
py-argparse
…
py-ase
…
py-asn1crypto
…
py-astroid
…
py-astropy
…
py-attrs
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-autopep8
…
py-avro
added avro and avro_json_serializer python packages (#8351)
2018-06-01 15:06:27 -05:00
py-avro-json-serializer
added avro and avro_json_serializer python packages (#8351)
2018-06-01 15:06:27 -05:00
py-babel
…
py-backcall
Add py-backcall (#8701)
2018-07-13 10:59:02 -05:00
py-backports-abc
…
py-backports-functools-lru-cache
Remove unnecessary version-specific URL overrides (#8693)
2018-07-12 07:28:11 +02:00
py-backports-shutil-get-terminal-size
views: packages can customize how they're added to views (#7152)
2018-06-26 16:14:05 -07:00
py-backports-ssl-match-hostname
views: packages can customize how they're added to views (#7152)
2018-06-26 16:14:05 -07:00
py-basemap
…
py-bcbio-gff
…
py-beautifulsoup4
…
py-binwalk
…
py-biom-format
Package py-biom-format fixes (#8727)
2018-08-02 13:51:51 -04:00
py-biopython
…
py-bitarray
…
py-bitstring
…
py-bleach
…
py-blessings
…
py-bokeh
…
py-boltons
…
py-bottleneck
…
py-breakseq2
…
py-brian
…
py-brian2
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-bsddb3
py-bsddb3: update (#8006)
2018-05-03 19:20:14 -05:00
py-bx-python
…
py-cartopy
add package py-cartopy and dependencies (#8406)
2018-06-07 08:10:39 -05:00
py-cclib
…
py-cdat-lite
…
py-cdo
…
py-certifi
…
py-cffi
added py-cffi 1.11.5 (#8349)
2018-06-01 13:13:33 -05:00
py-chardet
…
py-checkm-genome
…
py-cheetah
new packages: workrave and its dependencies (#7753)
2018-06-21 18:25:26 -07:00
py-click
…
py-cligj
…
py-cloudpickle
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-cnvkit
Py cnvkit: updating dependencies (#8057)
2018-05-08 17:54:15 -05:00
py-cogent
…
py-colorama
…
py-colormath
…
py-configparser
…
py-counter
…
py-coverage
…
py-cpuinfo
…
py-crispresso
py-crispresso: Create new package (#7990)
2018-05-03 13:09:59 -05:00
py-crossmap
py-crossmap: needs py-setuptools (#8898)
2018-08-06 17:43:14 -05:00
py-cryptography
…
py-csvkit
…
py-current
…
py-cutadapt
py-cutadapt: needs py-setuptools at runtime (#8689)
2018-07-11 14:53:35 -05:00
py-cvxopt
…
py-cycler
…
py-cython
py-cython: added version 0.28.3 (#8379)
2018-06-05 13:36:29 -05:00
py-dask
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-dateutil
…
py-dbf
…
py-decorator
…
py-deeptools
…
py-dendropy
…
py-dill
…
py-discover
…
py-dlcpar
py-dlcpar: Add package description (#8032)
2018-05-07 06:44:16 -05:00
py-docopt
Add py-docopt package (#8236)
2018-05-22 10:49:12 -05:00
py-docutils
…
py-doxypy
…
py-doxypypy
…
py-dryscrape
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-dxchange
…
py-dxfile
…
py-easybuild-easyblocks
…
py-easybuild-easyconfigs
…
py-easybuild-framework
…
py-edffile
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-editdistance
…
py-elasticsearch
…
py-elephant
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-emcee
…
py-entrypoints
…
py-enum34
…
py-epydoc
…
py-espresso
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-espressopp
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-et-xmlfile
…
py-eventlet
…
py-execnet
…
py-fastaindex
…
py-fasteners
…
py-faststructure
…
py-fiscalyear
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-flake8
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-flake8-polyfill
add py-pep8-naming package
2018-07-19 00:41:36 -07:00
py-flask
…
py-flask-compress
…
py-flask-socketio
…
py-flexx
…
py-fn
py-fn: new package (#8705)
2018-07-13 20:31:39 -05:00
py-fparser
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-funcsigs
…
py-functools32
…
py-future
…
py-futures
…
py-gdbgui
…
py-genders
…
py-genshi
…
py-gevent
…
py-git2
…
py-git-review
…
py-gnuplot
…
py-goatools
…
py-gpaw
…
py-greenlet
…
py-griddataformats
…
py-guidata
…
py-guiqwt
…
py-h5py
…
py-html2text
…
py-html5lib
…
py-htseq
…
py-httpbin
…
py-hypothesis
…
py-idna
…
py-igraph
…
py-illumina-utils
…
py-imageio
Add py-imageio for python3 (#8553)
2018-06-26 12:55:10 -05:00
py-imagesize
…
py-iminuit
…
py-importlib
…
py-ipaddress
…
py-ipdb
…
py-ipykernel
…
py-ipython
…
py-ipython-genutils
…
py-ipywidgets
…
py-isort
…
py-itsdangerous
…
py-jdcal
…
py-jedi
…
py-jinja2
…
py-joblib
…
py-jpype
…
py-jsonschema
…
py-junit-xml
…
py-jupyter-client
…
py-jupyter-console
…
py-jupyter-core
…
py-jupyter-notebook
…
py-keras
…
py-kiwisolver
…
py-lark-parser
Py-lark-parser: new package (#8761)
2018-07-19 14:00:19 -05:00
py-latexcodec
…
py-lazy
…
py-lazy-object-proxy
…
py-lazy-property
Adding lazy property python module (#47) (#8867)
2018-08-02 11:44:16 -05:00
py-lazyarray
…
py-libconf
…
py-libensemble
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-line-profiler
…
py-linecache2
…
py-lit
…
py-llvmlite
Update py-llvmlite to reflect llvm@6 requirement for versions >0.23.0 (#8109)
2018-05-14 11:26:01 -05:00
py-lmfit
…
py-localcider
…
py-locket
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-lockfile
…
py-logilab-common
…
py-lrudict
…
py-lxml
…
py-lzstring
…
py-macholib
…
py-machotools
…
py-macs2
…
py-maestrowf
…
py-mako
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-mappy
…
py-markdown
…
py-markupsafe
…
py-matplotlib
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-mccabe
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-mdanalysis
…
py-meep
…
py-memory-profiler
…
py-methylcode
…
py-mg-rast-tools
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-misopy
…
py-mistune
…
py-mock
…
py-moltemplate
…
py-mongo
…
py-monotonic
…
py-monty
…
py-more-itertools
py-more-itertools: new package (#8004)
2018-05-04 16:27:14 -05:00
py-mpi4py
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-mpmath
py-mpmath: added version 1.0.0 (#8382)
2018-06-06 07:59:53 -05:00
py-multiprocess
…
py-multiqc
…
py-mx
…
py-mxnet
…
py-myhdl
…
py-mysqldb1
…
py-natsort
Package/geopm (#7560)
2018-04-17 07:51:56 -05:00
py-nbconvert
…
py-nbformat
…
py-neo
…
py-nestle
…
py-netcdf4
…
py-netifaces
…
py-networkx
…
py-nose
…
py-nosexcover
…
py-numba
Updated llvm to version 6.0.1. The previous 6.0.0 had an incorrectly … (#8801)
2018-07-26 17:47:18 -05:00
py-numexpr
update version for numexpr (#8702)
2018-07-13 15:50:21 -05:00
py-numexpr3
Add numexpr 3 (#8107)
2018-05-14 09:46:14 -05:00
py-numpy
py-numpy: Add CPATH in modulefile (#8466)
2018-07-26 17:50:00 -05:00
py-numpydoc
…
py-olefile
…
py-ont-fast5-api
…
py-openpmd-validator
…
py-openpyxl
…
py-openslide-python
A new package: py-openslide-python. (#7907)
2018-05-03 08:37:52 -05:00
py-opentuner
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-ordereddict
…
py-oset
…
py-owslib
add package py-cartopy and dependencies (#8406)
2018-06-07 08:10:39 -05:00
py-packaging
…
py-palettable
…
py-pandas
…
py-paramiko
…
py-partd
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-pathlib2
…
py-pathos
…
py-pathspec
…
py-patsy
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-pbr
…
py-pep8-naming
add py-pep8-naming package
2018-07-19 00:41:36 -07:00
py-perf
…
py-performance
…
py-periodictable
…
py-petsc4py
…
py-pexpect
…
py-phonopy
…
py-pickleshare
…
py-pil
…
py-pillow
Updating py-pillow with change in checksum for version 5.1.0. (#8547)
2018-06-22 18:02:27 -05:00
py-pip
Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377)
2018-06-05 13:36:09 -05:00
py-pipits
…
py-pkgconfig
py-pkgconfig: Made nose dependency type=build,test instead of just type=test, to prevent setuptools from silently installing its own copy of nose (#8749)
2018-07-18 21:42:04 -05:00
py-plotly
…
py-pluggy
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-ply
py-ply: added version 3.11 (#8383)
2018-07-11 22:21:55 +02:00
py-pmw
…
py-poster
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
py-pox
…
py-ppft
…
py-prettytable
…
py-proj
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-projectq
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-prompt-toolkit
…
py-protobuf
Add 3.5.2; Add optional cpp implementation enable for py-protobuf (#8069)
2018-05-09 20:52:39 -05:00
py-psutil
modified: var/spack/repos/builtin/packages/py-psutil/package.py (#8420)
2018-06-07 10:26:48 -05:00
py-psyclone
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-ptyprocess
…
py-pudb
…
py-py
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-py2bit
…
py-py2cairo
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-py2neo
…
py-py4j
…
py-pyani
…
py-pyasn1
…
py-pybedtools
…
py-pybigwig
…
py-pybind11
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-pybtex
…
py-pybtex-docutils
…
py-pychecker
…
py-pycodestyle
…
py-pycparser
pycparser: add version 2.18 (#8760)
2018-07-19 12:49:05 -05:00
py-pycrypto
…
py-pycurl
…
py-pydatalog
…
py-pydispatcher
…
py-pydot
…
py-pyelftools
…
py-pyepsg
add package py-cartopy and dependencies (#8406)
2018-06-07 08:10:39 -05:00
py-pyfaidx
…
py-pyfasta
…
py-pyfftw
…
py-pyflakes
…
py-pygdbmi
…
py-pygments
…
py-pygobject
…
py-pygpu
…
py-pygtk
…
py-pylint
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
py-pymatgen
…
py-pyminifier
…
py-pymol
py-pymol: new package (#7823)
2018-04-21 10:28:09 -05:00
py-pympler
…
py-pynn
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-pypar
…
py-pyparsing
…
py-pypeflow
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-pyprof2html
…
py-pyqi
py-pyqi: new package (#8726)
2018-07-17 16:07:38 -05:00
py-pyqt
…
py-pyrad
…
py-pysam
Bump pysam to 0.14.1. (#7988)
2018-05-04 22:11:26 -05:00
py-pyscaf
…
py-pyserial
Fix base class for py-pyserial (#8633)
2018-07-02 22:47:56 -05:00
py-pyshp
add package py-cartopy and dependencies (#8406)
2018-06-07 08:10:39 -05:00
py-pyside
py-pyside: update (#8002)
2018-05-03 16:50:55 -05:00
py-pysocks
…
py-pysqlite
py-pysqlite: Create new package (#8042)
2018-05-07 13:42:24 -05:00
py-pytables
…
py-pytest
modified: var/spack/repos/builtin/packages/py-pytest/package.py (#8890)
2018-08-06 09:21:49 -05:00
py-pytest-cov
…
py-pytest-flake8
…
py-pytest-httpbin
…
py-pytest-mock
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py-pytest-runner
…
py-pytest-xdist
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py-python-daemon
…
py-python-engineio
…
py-python-gitlab
…
py-python-levenshtein
…
py-python-socketio
…
py-pythonqwt
…
py-pytorch
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-pytz
…
py-pyutilib
…
py-pyvcf
…
py-pywavelets
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py-pyyaml
…
py-qtawesome
…
py-qtconsole
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-qtpy
…
py-quantities
…
py-quast
…
py-radical-utils
…
py-ranger
…
py-rasterio
…
py-readme-renderer
…
py-regex
…
py-reportlab
…
py-requests
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-requests-toolbelt
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
py-restview
…
py-rope
…
py-rpy2
added rpy2 2.9.4 and added py-jinja2 dependency (#8645)
2018-07-05 21:33:32 -05:00
py-rsa
…
py-rseqc
…
py-rtree
…
py-saga-python
…
py-scandir
…
py-scientificpython
…
py-scikit-image
…
py-scikit-learn
py-scikit-learn: added version 0.19.1 and updated dependencies (#8399)
2018-06-06 07:41:48 -05:00
py-scipy
Remove unnecessary version-specific URL overrides (#8693)
2018-07-12 07:28:11 +02:00
py-seaborn
…
py-setuptools
Added py-pip 10.0.1 and py-setuptools 39.2.0 (#8377)
2018-06-05 13:36:09 -05:00
py-setuptools-git
…
py-setuptools-scm
…
py-sfepy
…
py-sh
…
py-shapely
add package py-cartopy and dependencies (#8406)
2018-06-07 08:10:39 -05:00
py-shiboken
…
py-simplegeneric
…
py-simplejson
…
py-singledispatch
…
py-sip
…
py-six
…
py-slepc4py
…
py-slurm-pipeline
…
py-sncosmo
…
py-snowballstemmer
…
py-snuggs
py-snuggs: Added depends_on py-parsing. The build uses setuptools, which would otherwise silently try to install pyparsing itself, presumably into the python home dir (obviously not ideal). (#8748)
2018-07-18 21:42:57 -05:00
py-spectra
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py-spefile
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-spglib
…
py-sphinx
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-sphinx-bootstrap-theme
…
py-sphinx-rtd-theme
…
py-sphinxcontrib-bibtex
…
py-sphinxcontrib-programoutput
…
py-sphinxcontrib-websupport
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
py-spyder
…
py-spykeutils
…
py-sqlalchemy
…
py-statsmodels
…
py-stevedore
…
py-storm
…
py-subprocess32
…
py-symengine
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
py-symfit
…
py-sympy
py-sympy: added version 1.1.1 (#8381)
2018-06-05 13:42:18 -05:00
py-tabulate
…
py-tappy
…
py-terminado
…
py-testinfra
py-testinfra: Add versions 1.12.0 and 1.13.0 (#8222)
2018-05-21 15:57:25 -05:00
py-tetoolkit
…
py-theano
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-tifffile
…
py-toml
…
py-tomopy
…
py-toolz
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-tornado
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py-tqdm
…
py-traceback2
…
py-traitlets
…
py-tuiview
…
py-twisted
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py-typing
…
py-tzlocal
…
py-udunits
py-udunits: New package (#7998)
2018-05-05 17:33:44 -05:00
py-umi-tools
…
py-unittest2
…
py-unittest2py3k
…
py-urllib3
…
py-urwid
…
py-vcversioner
…
py-virtualenv
py-virtualenv: added version 16.0.0 (#8380)
2018-06-05 13:35:43 -05:00
py-virtualenv-clone
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py-virtualenvwrapper
…
py-vmd-python
added py-setuptools as dependency (#8843)
2018-08-02 11:24:26 -05:00
py-vsc-base
…
py-vsc-install
…
py-wcsaxes
…
py-wcwidth
…
py-webkit-server
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-weblogo
new package: py-weblogo (#7886)
2018-04-24 19:31:37 -07:00
py-werkzeug
…
py-wheel
…
py-widgetsnbextension
…
py-wrapt
…
py-xarray
…
py-xattr
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-xlrd
…
py-xlsxwriter
…
py-xmlrunner
…
py-xopen
…
py-xpyb
…
py-xvfbwrapper
…
py-yamlreader
py-yamlreader: new package (#7997)
2018-05-03 16:58:40 -05:00
py-yapf
…
py-yt
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
py-zmq
…
py-zope-event
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
py-zope-interface
Add dependencies for py-dask (#8120)
2018-05-16 22:54:33 -05:00
python
add patch for gcc@8 for python 2.7.14 (#8990)
2018-08-16 07:51:09 -05:00
qbank
…
qbox
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
qhull
…
qmcpack
QMCPACK Spack Package Update (Summer 2018) (#9008)
2018-08-18 11:26:17 -05:00
qmd-progress
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
qorts
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
qrupdate
…
qt
fix qt@5.8: build on systems without wayland (#8417)
2018-06-07 10:50:05 -05:00
qt-creator
…
qtgraph
qtgraph and cbtf-argonavis create proper library paths in modules (#8797)
2018-08-17 15:58:08 -07:00
qthreads
…
quantum-espresso
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
quinoa
Add top-level attributes for git M-P packages
2018-07-25 23:10:10 -07:00
qwt
…
r
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
r-a4
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-a4base
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-a4classif
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-a4core
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-a4preproc
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-a4reporting
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-abadata
…
r-abaenrichment
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-abind
…
r-absseq
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-acde
…
r-acepack
…
r-acgh
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-acme
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ada
…
r-adabag
…
r-ade4
…
r-adegenet
…
r-adsplit
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-aer
r-aer: a new package. (#8567)
2018-06-28 15:40:00 -05:00
r-affxparser
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affy
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affycomp
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affycompatible
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affycontam
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affycoretools
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affydata
…
r-affyexpress
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affyilm
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affyio
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affypdnn
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affyplm
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affyqcreport
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-affyrnadegradation
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-agdex
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-agilp
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-agimicrorna
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-aims
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-aldex2
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-allelicimbalance
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-alpine
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-als
…
r-alsace
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-altcdfenvs
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-amap
r-amap: new package (#8935)
2018-08-10 15:21:22 -05:00
r-ampliqueso
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-analysispageserver
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-anaquin
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-aneufinder
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-aneufinderdata
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annaffy
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annotate
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annotationdbi
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annotationfilter
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annotationforge
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-annotationhub
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ape
…
r-argparse
r-argparse: new package (#8944)
2018-08-13 22:21:30 -05:00
r-assertthat
…
r-backports
…
r-bamsignals
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-base64
…
r-base64enc
…
r-bbmisc
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-beanplot
…
r-bh
…
r-biasedurn
r-biasedurn: new package (#8937)
2018-08-10 16:08:31 -05:00
r-bindr
…
r-bindrcpp
r-bindrcpp: add new version (#8950)
2018-08-11 09:21:05 -05:00
r-biobase
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biocgenerics
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biocinstaller
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biocparallel
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biocstyle
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biom-utils
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
r-biomart
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biomformat
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biostrings
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-biovizbase
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-bit
…
r-bit64
…
r-bitops
…
r-blob
…
r-bookdown
…
r-boot
…
r-brew
…
r-broom
…
r-bsgenome
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-bumphunter
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-c50
…
r-callr
…
r-car
…
r-caret
…
r-category
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-catools
…
r-cdcfluview
r-cdcfluview: new package (#8089)
2018-05-12 18:28:18 -05:00
r-cellranger
…
r-cghflasso
r-cghflasso v0 2 1 - new package (#8177)
2018-05-21 16:12:35 -05:00
r-checkmate
…
r-checkpoint
…
r-chemometrics
…
r-chron
…
r-circlize
…
r-class
…
r-classint
…
r-cli
…
r-clipr
…
r-cluster
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
r-clusterprofiler
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-cner
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-coda
…
r-codetools
…
r-coin
…
r-colorspace
…
r-complexheatmap
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-corpcor
…
r-corrplot
…
r-covr
…
r-cowplot
…
r-crayon
…
r-crosstalk
…
r-ctc
r-ctc: new package (#8936)
2018-08-12 19:46:14 -05:00
r-cubature
…
r-cubist
…
r-curl
…
r-data-table
…
r-dbi
…
r-dbplyr
…
r-delayedarray
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-deldir
…
r-dendextend
…
r-deoptim
…
r-deoptimr
…
r-deseq
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-deseq2
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-desolve
…
r-devtools
…
r-diagrammer
…
r-dicekriging
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-dichromat
…
r-diffusionmap
…
r-digest
…
r-diptest
…
r-dirichletmultinomial
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-dismo
R dismo 1 1 4 - new package (#8176)
2018-05-17 19:50:19 -05:00
r-dnacopy
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-do-db
…
r-domc
…
r-doparallel
…
r-dorng
…
r-dose
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-downloader
…
r-dplyr
…
r-dt
…
r-dtw
…
r-dygraphs
…
r-e1071
…
r-edger
r-edger: new version (#8951)
2018-08-13 22:18:34 -05:00
r-ellipse
…
r-ensembldb
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ergm
…
r-evaluate
…
r-expm
…
r-factoextra
…
r-factominer
…
r-fastcluster
r-fastcluster: new package (#8934)
2018-08-10 15:01:12 -05:00
r-fastmatch
…
r-ff
…
r-fftwtools
…
r-fgsea
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-filehash
…
r-findpython
r-findpython: new package (#8943)
2018-08-11 09:23:34 -05:00
r-fit-models
r-fit-models: Create new package (#8122)
2018-05-14 16:50:54 -05:00
r-flashclust
…
r-flexclust
…
r-flexmix
…
r-fnn
…
r-forcats
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r-foreach
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r-forecast
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r-foreign
…
r-formatr
…
r-formula
…
r-fpc
…
r-fracdiff
…
r-futile-logger
…
r-futile-options
Add list_url to allow download of prior versions from cran archive (#8141)
2018-05-15 22:10:20 -05:00
r-gbm
…
r-gcrma
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gdata
…
r-gdsfmt
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-geiger
…
r-genefilter
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genelendatabase
r-genelendatabase: new package (#8938)
2018-08-13 22:21:03 -05:00
r-geneplotter
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genie3
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genomeinfodb
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genomeinfodbdata
…
r-genomicalignments
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genomicfeatures
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-genomicranges
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-geomorph
…
r-geoquery
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-geosphere
…
r-getopt
…
r-getoptlong
…
r-ggally
…
r-ggbio
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ggdendro
…
r-ggjoy
…
r-ggmap
…
r-ggplot2
…
r-ggpubr
…
r-ggrepel
…
r-ggridges
…
r-ggsci
…
r-ggvis
…
r-gistr
…
r-git2r
…
r-glimma
r-glimma: new package (#8940)
2018-08-13 22:20:41 -05:00
r-glmnet
…
r-globaloptions
…
r-glue
…
r-gmodels
…
r-gmp
…
r-go-db
…
r-googlevis
…
r-goplot
r-goplot: new package (#8942)
2018-08-11 09:26:16 -05:00
r-gosemsim
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gostats
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gplots
…
r-graph
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gridbase
…
r-gridextra
…
r-gseabase
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gss
…
r-gsubfn
…
r-gtable
…
r-gtools
…
r-gtrellis
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-gviz
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-haven
…
r-hexbin
…
r-highr
…
r-hmisc
…
r-hms
…
r-htmltable
…
r-htmltools
…
r-htmlwidgets
…
r-httpuv
…
r-httr
…
r-hwriter
…
r-hypergraph
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ica
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r-igraph
…
r-illuminaio
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-impute
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-influencer
…
r-inline
…
r-interactivedisplaybase
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-ipred
…
r-iranges
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-irdisplay
…
r-irkernel
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-irlba
…
r-iso
…
r-iterators
…
r-janitor
…
r-jaspar2018
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-jomo
r-mitml: new package and its dependencies r-jomo and r-pan (#8412)
2018-06-06 17:44:32 -05:00
r-jpeg
…
r-jsonlite
…
r-kegg-db
…
r-kegggraph
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-keggrest
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-kernlab
…
r-kernsmooth
…
r-kknn
…
r-knitr
…
r-labeling
…
r-lambda-r
Add list_url to allow download of prior versions from cran archive (#8141)
2018-05-15 22:10:20 -05:00
r-laplacesdemon
…
r-lars
…
r-lattice
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r-latticeextra
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r-lava
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r-lazyeval
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r-leaflet
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r-leaps
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r-learnbayes
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r-lhs
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-limma
r-limma: new version (#8952)
2018-08-13 22:18:12 -05:00
r-lme4
…
r-lmtest
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r-locfit
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r-log4r
…
r-lpsolve
…
r-lsei
…
r-lubridate
…
r-magic
…
r-magrittr
…
r-makecdfenv
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-maldiquant
…
r-mapproj
…
r-maps
…
r-maptools
…
r-markdown
…
r-mass
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r-matr
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
r-matrix
…
r-matrixmodels
…
r-matrixstats
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r-mclust
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r-mcmcglmm
…
r-mco
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-mda
…
r-memoise
…
r-mergemaid
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-methodss3
…
r-mgcv
…
r-mgraster
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
r-mice
r-mice: new package (#8423)
2018-06-08 14:48:54 -05:00
r-mime
…
r-minfi
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-minqa
…
r-misc3d
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-mitml
r-mitml: new package and its dependencies r-jomo and r-pan (#8412)
2018-06-06 17:44:32 -05:00
r-mixtools
…
r-mlbench
…
r-mlinterfaces
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-mlr
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-mlrmbo
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-mmwrweek
r-mmwrweek: new pacakge (#8086)
2018-05-10 17:32:58 -05:00
r-mnormt
…
r-modelmetrics
…
r-modelr
…
r-modeltools
…
r-mpm
…
r-msnbase
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-multcomp
…
r-multtest
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-munsell
…
r-mvtnorm
…
r-mzid
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-mzr
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-nanotime
…
r-ncbit
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r-ncdf4
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r-network
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r-networkd3
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r-nlme
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r-nloptr
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r-nmf
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r-nnet
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r-nnls
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r-nor1mix
…
r-np
…
r-numderiv
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r-oligoclasses
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-oo
…
r-openssl
…
r-org-hs-eg-db
…
r-organismdbi
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-packrat
…
r-pacman
…
r-pamr
…
r-pan
r-mitml: new package and its dependencies r-jomo and r-pan (#8412)
2018-06-06 17:44:32 -05:00
r-parallelmap
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-paramhelpers
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-party
…
r-partykit
…
r-pathview
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-pbapply
…
r-pbdzmq
…
r-pbkrtest
…
r-pcamethods
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-pcapp
…
r-permute
…
r-pfam-db
…
r-phangorn
…
r-phantompeakqualtools
…
r-phyloseq
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-picante
r-picante: Create new package (#8117)
2018-05-14 13:00:03 -05:00
r-pkgconfig
…
r-pkgmaker
…
r-plogr
…
r-plot3d
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-plotly
…
r-plotrix
…
r-pls
…
r-plyr
…
r-pmcmr
…
r-png
…
r-powerlaw
…
r-prabclus
…
r-praise
…
r-preprocesscore
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-prettyunits
…
r-proc
r-proc v1 12 1 - New package (#8191)
2018-05-19 11:26:44 -05:00
r-prodlim
…
r-progress
…
r-protgenerics
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-proto
…
r-proxy
…
r-pryr
…
r-psych
…
r-ptw
…
r-purrr
…
r-quadprog
…
r-quantmod
…
r-quantreg
…
r-quantro
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-qvalue
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-r6
…
r-randomforest
…
r-ranger
…
r-rappdirs
…
r-raster
…
r-rbgl
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-rbokeh
…
r-rcolorbrewer
…
r-rcpp
Bump r-rcpp versions. (#8016)
2018-05-03 22:54:45 -05:00
r-rcpparmadillo
…
r-rcppblaze
…
r-rcppcctz
…
r-rcppcnpy
r-rcppcnpy: a new package. (#8139)
2018-05-16 12:45:24 -05:00
r-rcppeigen
r-rstan: new version and dependents (#8158)
2018-05-17 15:26:38 -05:00
r-rcppprogress
…
r-rcurl
…
r-rda
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
r-readr
…
r-readxl
…
r-registry
…
r-rematch
…
r-reordercluster
…
r-reportingtools
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-repr
…
r-reprex
…
r-reshape
…
r-reshape2
…
r-rex
…
r-rgdal
…
r-rgenoud
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-rgeos
…
r-rgl
…
r-rgooglemaps
…
r-rgraphviz
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-rhdf5
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-rhtslib
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
r-rinside
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-rjags
…
r-rjava
…
r-rjson
…
r-rjsonio
…
r-rlang
…
r-rmarkdown
…
r-rminer
…
r-rmpfr
…
r-rmpi
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
r-rmysql
…
r-rngtools
…
r-robustbase
…
r-rocr
…
r-rodbc
…
r-rots
r-rots: new package (#8941)
2018-08-14 07:14:06 -05:00
r-roxygen2
…
r-rpart
…
r-rpart-plot
…
r-rpostgresql
…
r-rprojroot
…
r-rsamtools
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-rsnns
…
r-rsolnp
…
r-rsqlite
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
r-rstan
r-rstan: new version and dependents (#8158)
2018-05-17 15:26:38 -05:00
r-rstudioapi
…
r-rtracklayer
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-rtsne
…
r-rvcheck
…
r-rvest
…
r-rzmq
…
r-s4vectors
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-samr
…
r-sandwich
…
r-scales
…
r-scatterplot3d
…
r-sdmtools
…
r-segmented
…
r-selectr
…
r-seqinr
…
r-seqlogo
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-seurat
…
r-sf
…
r-sfsmisc
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
r-shape
…
r-shiny
…
r-shinydashboard
r-shinydashboard: Create new package (#8116)
2018-05-14 13:00:18 -05:00
r-shortread
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-siggenes
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-simpleaffy
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-sm
r-sm: new package (#8945)
2018-08-11 09:22:21 -05:00
r-smoof
Additional r packages (#7892)
2018-04-25 20:59:46 -05:00
r-sn
…
r-snow
…
r-snowfall
…
r-snprelate
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-som
…
r-somaticsignatures
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-sourcetools
…
r-sp
…
r-sparsem
…
r-spatial
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
r-spdep
…
r-speedglm
…
r-spem
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-splitstackshape
r-splitstackshape: Create new package. (#8370)
2018-06-06 08:03:23 -05:00
r-sqldf
…
r-squash
r-squash: Create new package (#8118)
2018-05-14 12:59:49 -05:00
r-stanheaders
r-rstan: new version and dependents (#8158)
2018-05-17 15:26:38 -05:00
r-statmod
…
r-statnet-common
…
r-stringi
…
r-stringr
…
r-strucchange
…
r-subplex
…
r-summarizedexperiment
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-survey
…
r-survival
…
r-sva
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-tarifx
…
r-tclust
…
r-tensora
…
r-testit
…
r-testthat
…
r-tfbstools
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-tfmpvalue
…
r-th-data
…
r-threejs
…
r-tibble
…
r-tidycensus
…
r-tidyr
…
r-tidyselect
…
r-tidyverse
…
r-tiff
…
r-tigris
…
r-timedate
…
r-tmixclust
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-topgo
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-trimcluster
…
r-truncnorm
…
r-trust
…
r-tseries
…
r-tsne
…
r-ttr
…
r-udunits2
…
r-units
…
r-utf8
r-utf8 v1.1.3 - New package (#8206)
2018-05-19 16:23:03 -05:00
r-utils
…
r-uuid
…
r-variantannotation
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-varselrf
…
r-vcd
…
r-vegan
…
r-vgam
…
r-vipor
r-vipor: Create new package (#8128)
2018-05-14 16:38:59 -05:00
r-viridis
…
r-viridislite
…
r-visnetwork
…
r-vsn
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-whisker
…
r-withr
…
r-xde
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-xgboost
…
r-xlconnect
…
r-xlconnectjars
…
r-xlsx
…
r-xlsxjars
…
r-xmapbridge
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-xml
…
r-xml2
…
r-xtable
…
r-xts
…
r-xvector
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-yaml
…
r-yapsa
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-yaqcaffy
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-yarn
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-zlibbioc
Add top-level attributes for git R (Bioconductor) packages
2018-07-25 23:10:10 -07:00
r-zoo
…
racon
new package: racon (bioinformatics) (#7726)
2018-04-22 07:54:48 -05:00
raft
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
ragel
New colm, ragel packages (#7867)
2018-04-23 10:50:58 -05:00
raja
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
randfold
…
random123
…
randrproto
…
rankstr
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
rapidjson
…
ravel
…
raxml
…
ray
…
rdma-core
rdma-core: new package (#7835)
2018-04-25 10:33:30 -05:00
rdp-classifier
…
re2c
…
readfq
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
readline
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
recordproto
…
redset
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
redundans
…
relion
added relion version 3 (beta) (#8872)
2018-08-16 10:51:58 -05:00
rempi
added ReMPI version 1.1.0 (#8548)
2018-06-22 17:03:41 -05:00
rename
…
rendercheck
…
renderproto
…
repeatmasker
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
resourceproto
…
revbayes
…
rgb
…
rhash
…
rlwrap
…
rmlab
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
rna-seqc
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
rngstreams
Add new package: rngstreams (#8395)
2018-06-06 12:10:56 -05:00
rockstar
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
root
…
rose
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
ross
ROSS: added ROSS package (#8964)
2018-08-15 14:24:28 -07:00
rr
add commented test dependencies (#8407)
2018-06-07 10:33:59 -05:00
rsbench
…
rsem
…
rstart
…
rsync
…
rtags
…
rtax
…
ruby
Add url_for_version and list_url to Ruby package (#8216)
2018-07-06 07:22:38 -05:00
ruby-gnuplot
…
ruby-narray
All git URLs end in .git
2018-07-25 23:10:10 -07:00
ruby-ronn
Package/geopm (#7560)
2018-04-17 07:51:56 -05:00
ruby-rubyinline
…
ruby-svn2git
New Package: ruby-svn2git (#7979)
2018-05-03 10:12:57 -05:00
ruby-terminal-table
…
rust
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
rust-bindgen
…
sabre
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sailfish
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
salmon
salmon: adding in version restriction for boost (#8129)
2018-05-14 18:48:28 -05:00
sambamba
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
samblaster
…
samrai
samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501)
2018-06-18 13:52:24 -05:00
samtools
Add samtools 1.9 (#8961)
2018-08-12 18:54:50 -05:00
sandbox
…
sas
…
satsuma2
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
savanna
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
saws
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sbt
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
scala
Added the latest versions of a few packages (#7910)
2018-04-26 14:46:45 +02:00
scalasca
…
scalpel
…
scan-for-matches
…
scons
…
scorec-core
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
scorep
scorep: make optional packages variants (#9011)
2018-08-18 11:25:05 -05:00
scotch
Scotch: update package (#8711)
2018-07-15 15:54:28 -05:00
scr
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
screen
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
scripts
…
scrnsaverproto
…
sctk
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
sdl2
…
sdl2-image
…
sed
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
seqan
…
seqprep
…
seqtk
…
serf
…
sessreg
…
setxkbmap
…
sga
…
shapeit
…
shared-mime-info
added shared-mime-info version 1.9 (#8063)
2018-05-08 17:52:02 -05:00
shiny-server
…
shocklibs
py-mg-rast-tools: Create new package and its dependencies. (#7816)
2018-04-21 10:28:44 -05:00
shoremap
shoremap: new package (#7343)
2018-05-12 08:22:45 +02:00
shortbred
…
shortstack
…
showfont
…
shuffile
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
sickle
…
siesta
…
signalp
…
signify
…
silo
silo: Make silo use AutotoolsPackage (#8551)
2018-06-22 17:19:03 -05:00
simplemoc
simplemoc: version bump (#8884)
2018-08-03 14:31:06 -05:00
simul
…
simulationio
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
singularity
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sleef
sleef: a new library. (#8198)
2018-05-19 11:26:31 -05:00
slepc
slepc: add blopex variant (#8820)
2018-07-30 18:18:36 -05:00
slurm
…
smalt
…
smproxy
…
snakemake
…
snap
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
snap-berkeley
…
snap-korf
…
snappy
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00
snbone
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sniffles
…
snpeff
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
snphylo
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
snptest
…
soap2
…
soapdenovo2
…
soapdenovo-trans
…
soapindel
…
soapsnp
…
sofa-c
…
somatic-sniper
…
sortmerna
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sosflow
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sowing
sowing: update to version used by current petsc -i.e 1.1.25-p1 (#8561)
2018-06-24 17:02:39 -05:00
sox
…
spades
…
spark
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
sparsehash
…
sparta
…
spdlog
…
spectrum-mpi
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
speex
…
spglib
…
sph2pipe
…
spherepack
…
spindle
…
spot
…
sqlite
add sqlitebrowser (#8418)
2018-06-07 11:34:29 -05:00
sqlitebrowser
add sqlitebrowser (#8418)
2018-06-07 11:34:29 -05:00
squid
…
sra-toolkit
…
sspace-longread
…
sspace-standard
…
sst-dumpi
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
sst-macro
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
stacks
…
staden-io-lib
…
star
Remove unnecessary version-specific URL overrides (#8693)
2018-07-12 07:28:11 +02:00
star-ccm-plus
…
startup-notification
…
stat
add fgfs variant to stat and develop version (#8919)
2018-08-09 10:56:08 -05:00
stc
…
stow
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
strace
…
stream
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
strelka
…
stress
…
stringtie
…
structure
…
sublime-text
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
subread
subread: use compiler wrappers when compiling (#8328)
2018-06-01 10:30:47 +02:00
subversion
…
suite-sparse
suite-sparse: add version 5.3.0 (#8837)
2018-08-02 07:25:57 +02:00
sumaclust
…
sundials
Add new Sundials versions (#8075)
2018-05-09 20:53:25 -05:00
superlu
…
superlu-dist
superlu_dist should be built with 'HAVE_PARMETIS=TRUE'. (#8917)
2018-08-08 20:50:48 -04:00
superlu-mt
…
supernova
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
sw4lite
All git URLs end in .git
2018-07-25 23:10:10 -07:00
swap-assembler
swap-assembler: Create new package. (#8144)
2018-05-17 15:43:30 -05:00
swarm
…
swfft
All git URLs end in .git
2018-07-25 23:10:10 -07:00
swiftsim
adds new version to swiftsim (#8093)
2018-05-11 10:32:30 -05:00
swig
…
symengine
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
sympol
…
sz
sz: fix checksum for 2.0.2.0 (#8868)
2018-08-02 11:43:59 -05:00
tabix
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
talloc
…
tantan
…
tar
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
targetp
…
task
task: Add version 2.5.1 (#8184)
2018-05-18 10:28:19 -05:00
taskd
…
tasmanian
added Tasmanian versions 5.1 and development, enabled the Tasmanian options through +~ flags (#8804)
2018-07-27 10:10:32 -05:00
tassel
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
tau
Add new versions for TAU and PDT package (#8497)
2018-06-17 17:21:00 -05:00
tcl
tcl package: Install sources (#8153)
2018-06-08 11:10:40 -07:00
tcl-itcl
Add package tcl-itcl (#8578)
2018-06-27 10:05:00 -05:00
tcl-tcllib
…
tcl-tclxml
…
tclap
…
tcoffee
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
tcptrace
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
tcsh
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
tealeaf
…
templight
Templight package (#8782)
2018-07-26 11:19:14 -05:00
templight-tools
Templight package (#8782)
2018-07-26 11:19:14 -05:00
tetgen
…
tethex
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
texinfo
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
texlive
Create custom PATH that texlive requires in its module. (#8064)
2018-05-12 18:40:36 -05:00
the-platinum-searcher
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
the-silver-searcher
…
thrift
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00
thrust
…
tig
…
tinyxml
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
tinyxml2
…
tioga
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
tk
…
tmalign
…
tmhmm
…
tmux
Added the latest versions of a few packages (#7910)
2018-04-26 14:46:45 +02:00
tmuxinator
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
tophat
Add Tophat v2.1.2, fixes automake issues (#8266)
2018-05-24 20:04:03 -05:00
tppred
…
transabyss
…
transdecoder
transdecoder: needs perl-uri-escape (#8690)
2018-07-11 17:38:58 -05:00
transposome
…
transset
…
trapproto
…
tree
…
trf
trf: make executable (#8265)
2018-05-24 10:47:17 -05:00
triangle
…
trilinos
Trilinos: Update rules for superlu-dist version compatibility. (#8851)
2018-08-02 11:25:30 -05:00
trimgalore
trimgalore: Use perl from env (#8318)
2018-05-30 12:31:05 -05:00
trimmomatic
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
trinity
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
trnascan-se
…
turbine
…
turbomole
…
tut
…
twm
…
tycho2
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
typhon
Unit test fixes
2018-07-25 23:10:10 -07:00
typhonio
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
uberftp
…
ucx
ucx: needs numactl and rdma-core (#7836)
2018-04-25 10:34:55 -05:00
udunits2
…
ufo-core
…
ufo-filters
…
umpire
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
unblur
…
uncrustify
Added support for uncrustify 0.67. (#8655)
2018-07-06 19:59:34 -05:00
unibilium
…
unison
…
units
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
unixodbc
…
unuran
Add new package: unuran (#8397)
2018-06-11 08:41:32 -05:00
unzip
…
usearch
…
util-linux
…
util-macros
…
uuid
…
valgrind
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
vampirtrace
…
vardictjava
…
varscan
…
vc
…
vcftools
…
vcsh
…
vdt
…
vecgeom
Use GitLab's API endpoint for fetching a git snapshot. (#7881)
2018-04-26 16:40:11 -05:00
veclibfort
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
vegas2
…
veloc
ECP VELOC Package update (#8910)
2018-08-08 21:40:38 -04:00
velvet
…
verilator
style: bring packages in compliance with pep8-naming
2018-07-19 00:41:36 -07:00
verrou
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
videoproto
…
viennarna
…
viewres
…
vim
Added vim 8.1 (#8185)
2018-05-18 12:07:05 -05:00
virtualgl
…
visit
…
vizglow
…
vmatch
…
voropp
…
votca-csg
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
votca-ctp
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
votca-tools
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
votca-xtp
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
vpfft
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
vpic
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
vsearch
…
vt
vt: Create new package (#7947)
2018-04-30 12:11:06 -05:00
vtk
Specify Python executable in VTK package (#9000)
2018-08-17 14:51:49 -05:00
vtkh
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
vtkm
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
wannier90
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
wcslib
Add missing dependencies and variants to wcslib (#8603)
2018-07-05 21:36:29 -05:00
wget
Download GNU packages from mirrors (#8992)
2018-08-15 23:27:21 -07:00
wgsim
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
windowswmproto
…
wireshark
Replace pkg-config dependencies with virtual (#8783)
2018-08-02 13:29:04 -04:00
workrave
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
wt
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
wx
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
wxpropgrid
…
x11perf
…
xapian-core
…
xauth
…
xbacklight
…
xbiff
…
xbitmaps
…
xbraid
…
xcalc
…
xcb-demo
…
xcb-proto
…
xcb-util
…
xcb-util-cursor
…
xcb-util-errors
…
xcb-util-image
…
xcb-util-keysyms
…
xcb-util-renderutil
…
xcb-util-wm
…
xcb-util-xrm
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xclip
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xclipboard
…
xclock
…
xcmiscproto
…
xcmsdb
…
xcompmgr
…
xconsole
…
xcursor-themes
…
xcursorgen
…
xdbedizzy
…
xditview
…
xdm
…
xdpyinfo
…
xdriinfo
…
xedit
…
xerces-c
Add Xerces-C++ 3.2.1 (#8208)
2018-05-20 15:04:06 -05:00
xev
…
xextproto
…
xeyes
…
xf86bigfontproto
…
xf86dga
…
xf86dgaproto
…
xf86driproto
…
xf86miscproto
…
xf86rushproto
…
xf86vidmodeproto
…
xfd
…
xfindproxy
…
xfontsel
…
xfs
…
xfsinfo
…
xfwp
…
xgamma
…
xgc
…
xhmm
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xhost
…
xineramaproto
…
xinit
…
xinput
…
xios
Add top-level attributes for hg, svn, and git A-L packages
2018-07-25 23:10:10 -07:00
xkbcomp
…
xkbdata
…
xkbevd
…
xkbprint
…
xkbutils
…
xkeyboard-config
…
xkill
…
xload
…
xlogo
…
xlsatoms
…
xlsclients
…
xlsfonts
…
xmag
…
xman
…
xmessage
…
xmh
…
xmlf90
…
xmlto
…
xmodmap
…
xmore
…
xorg-cf-files
…
xorg-docs
…
xorg-gtest
…
xorg-server
…
xorg-sgml-doctools
…
xphelloworld
…
xplor-nih
…
xplsprinters
…
xpr
…
xprehashprinterlist
…
xprop
…
xproto
…
xproxymanagementprotocol
…
xqilla
…
xrandr
xrandr: needs randrproto (#7814)
2018-04-18 14:02:04 -05:00
xrdb
…
xrefresh
…
xrootd
Update with recent versions through 4.8.3 and add variants. (#7933)
2018-04-27 10:11:33 -05:00
xrx
…
xsbench
…
xscope
…
xsd
new package: XSD (#8784)
2018-08-02 16:28:19 -04:00
xsdk
xsdk: add slepc and amrex [and handle clang conflict wrt amrex] (#8932)
2018-08-13 22:17:17 -07:00
xsdktrilinos
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xset
…
xsetmode
…
xsetpointer
…
xsetroot
…
xsimd
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xsm
…
xstdcmap
…
xtensor
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xtensor-python
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xterm
…
xtl
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
xtrans
…
xtrap
…
xts
…
xvidtune
…
xvinfo
…
xwd
…
xwininfo
…
xwud
…
xxhash
New package xxhash. (#8530)
2018-06-20 13:51:53 -05:00
xz
Add xz 5.2.4 (#8202)
2018-05-20 15:01:33 -05:00
yajl
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
yambo
Further improvements to version parsing
2018-07-25 23:10:10 -07:00
yaml-cpp
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
yasm
Replace git=git with explicit branch names
2018-07-25 23:10:10 -07:00
yorick
install_tree, copy_tree can install into existing directory structures (#8289)
2018-08-15 09:30:09 -07:00
z3
…
zeromq
Add top-level attributes for git R-Z packages
2018-07-25 23:10:10 -07:00
zfp
…
zip
…
zlib
…
zoltan
zoltan: fix building with Intel compilers (#8985)
2018-08-15 10:40:58 -05:00
zsh
packages: do not use generic checksum= in version() directives
2018-07-23 11:57:52 -07:00
zstd
Parquet: new packages (#8601)
2018-07-04 07:24:38 -05:00