73c978ddd9
Replace use of `shutil.copytree` with `copy_tree` and `install_tree` functions in `llnl.util.filesystem`. - `copy_tree` copies without setting permissions. It should be used to copy files around in the build directory. - `install_tree` copies files and sets permissions. It should be used to copy files into the installation directory. - `install` and `copy` are analogous single-file functions. - add more extensive tests for these functions - update packages to use these functions.
48 lines
1.9 KiB
Python
48 lines
1.9 KiB
Python
##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Bioawk(MakefilePackage):
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"""Bioawk is an extension to Brian Kernighan's awk, adding the support of
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several common biological data formats, including optionally gzip'ed
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BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.
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"""
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homepage = "https://github.com/lh3/bioawk"
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url = "https://github.com/lh3/bioawk/archive/v1.0.zip"
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version('1.0', 'e423942689f944369de270900978be28')
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depends_on('zlib')
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depends_on('bison', type=('build'))
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parallel = False
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install('bioawk', prefix.bin)
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install('maketab', prefix.bin)
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