7b9f8abce5
Add language dependencies `c`, `cxx`, and `fortran`. These `depends_on` statements are auto-generated based on file extensions found in source tarballs/zipfiles. The `# generated` comment can be removed by package maintainers after validating correctness.
52 lines
1.6 KiB
Python
52 lines
1.6 KiB
Python
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from os import symlink
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from spack.package import *
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class Recon(MakefilePackage):
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"""RECON: a package for automated de novo identification of repeat families
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from genomic sequences."""
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homepage = "http://eddylab.org/software/recon/"
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url = "http://eddylab.org/software/recon/RECON1.05.tar.gz"
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license("GPL-2.0-only")
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version("1.05", sha256="4d4f76f439bcffd50380cffc41a80dc15fa4a80f38a04234e24da893ed7c025a")
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depends_on("c", type="build") # generated
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variant("repeatmasker", default=False, description="Use RepeatMasker developer patches (1.08)")
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patch("repeatmasker_recon.patch", when="+repeatmasker")
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build_directory = "src"
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depends_on("perl", type="run")
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@property
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def install_targets(self):
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return ["install", "BINDIR=%s" % self.prefix.bin]
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# edit the recon.pl script with the prefix as mentioned in the README
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def edit(self, spec, prefix):
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filter_file('$path = ""', '$path = "%s"' % prefix.bin, "scripts/recon.pl", string=True)
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# recon's makefile is very basic -- the target directory must
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# already exist to properly install
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@run_before("install")
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def prepare_bin(self):
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mkdirp(prefix.bin)
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# finally, install the scripts dir as well
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# and link the recon command into bin.
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@run_after("install")
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def finalize(self):
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install_tree("scripts", prefix.scripts)
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symlink(join_path(prefix.scripts, "recon.pl"), join_path(prefix.bin, "recon"))
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