18c2f1a57a
Explicitly import package utilities in all packages, and corresponding fallout.
This includes:
* rename `spack.package` to `spack.package_base`
* rename `spack.pkgkit` to `spack.package`
* update all packages in builtin, builtin_mock and tutorials to include `from spack.package import *`
* update spack style
* ensure packages include the import
* automatically add the new import and remove any/all imports of `spack` and `spack.pkgkit`
from packages when using `--fix`
* add support for type-checking packages with mypy when SPACK_MYPY_CHECK_PACKAGES
is set in the environment
* fix all type checking errors in packages in spack upstream
* update spack create to include the new imports
* update spack repo to inject the new import, injection persists to allow for a deprecation period
Original message below:
As requested @adamjstewart, update all packages to use pkgkit. I ended up using isort to do this,
so repro is easy:
```console
$ isort -a 'from spack.pkgkit import *' --rm 'spack' ./var/spack/repos/builtin/packages/*/package.py
$ spack style --fix
```
There were several line spacing fixups caused either by space manipulation in isort or by packages
that haven't been touched since we added requirements, but there are no functional changes in here.
* [x] add config to isort to make sure this is maintained going forward
124 lines
5.5 KiB
Python
124 lines
5.5 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class PyDatalad(PythonPackage):
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"""data distribution geared toward scientific datasets.
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DataLad makes data management and data distribution more accessible. To do
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that, it stands on the shoulders of Git and Git-annex to deliver a
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decentralized system for data exchange. This includes automated ingestion
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of data from online portals and exposing it in readily usable form as
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Git(-annex) repositories, so-called datasets. The actual data storage and
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permission management, however, remains with the original data providers.
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"""
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homepage = "https://datalad.org/"
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pypi = "datalad/datalad-0.14.6.tar.gz"
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version('0.15.5', sha256='e569494a5bd4e0f100013ec30529d5ac02e78ba476a75fc533c0d89c0e5473bc')
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version('0.15.3', sha256='44f8c5b3960c6d9848aeecd868c82330c49689a21e975597df5b112dc2e5c9f0')
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version('0.15.2', sha256='1a878cf521270f089ee1f50339e71cfd7eed41e708d895a12d5c483a9b59991b')
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version('0.15.1', sha256='0a905b3c3419786ae85b61a7aee34b0fc9eecd814f38408f2767ae7122b57a8b')
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version('0.14.6', sha256='149b25a00da133a81be3cbdc041a1985418f0918fa5961ba979e23b5b3c08c63')
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variant('downloaders-extra', default=False, description="Enable extra downloaders support")
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variant('misc', default=False, description="Enable misc")
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variant('tests', default=False, description="Enable tests")
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variant('metadata-extra', default=False, description="Enable extra metadata support")
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variant('duecredit', default=False, description="Enable duecredit support")
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variant('full', default=False, description="Enable support for all available variants")
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depends_on('python@3.6:', type=('build', 'run'))
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depends_on('py-setuptools@40.8.0:', type='build')
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depends_on('git', type=('build', 'run'))
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depends_on('git-annex', type=('build', 'run'))
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# core
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depends_on('py-appdirs', type=('build', 'run'))
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depends_on('py-chardet@3.0.4:', type=('build', 'run'))
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depends_on('py-distro', type=('build', 'run'), when='^python@3.8:')
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depends_on('py-importlib-metadata', type=('build', 'run'), when='^python@:3.7')
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depends_on('py-iso8601', type=('build', 'run'))
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depends_on('py-humanize', type=('build', 'run'))
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depends_on('py-fasteners@0.14:', type=('build', 'run'))
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depends_on('py-packaging', type=('build', 'run'), when='@0.15.4:')
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depends_on('py-patool@1.7:', type=('build', 'run'))
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depends_on('py-tqdm', type=('build', 'run'))
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depends_on('py-wrapt', type=('build', 'run'))
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depends_on('py-annexremote', type=('build', 'run'))
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# additional dependency on 'colorama' if platform_system=="Windows"'
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# downloaders
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depends_on('py-boto', type=('build', 'run'))
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depends_on('py-keyring@8.0:', type=('build', 'run'))
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depends_on('py-keyrings-alt', type=('build', 'run'))
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depends_on('py-msgpack', type=('build', 'run'))
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depends_on('py-requests@1.2:', type=('build', 'run'))
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# publish
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depends_on('py-pygithub', type=('build', 'run'))
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depends_on('py-python-gitlab', type=('build', 'run'), when='@0.14.7:')
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depends_on('py-jsmin', type=('build', 'run'), when='@:0.14')
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# metadata
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depends_on('py-simplejson', type=('build', 'run'))
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depends_on('py-whoosh', type=('build', 'run'))
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with when('+downloaders-extra'):
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depends_on('py-requests-ftp', type=('build', 'run'))
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with when('+misc'):
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depends_on('py-argcomplete', type=('build', 'run'), when='@0.14.7:')
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depends_on('py-pyperclip', type=('build', 'run'))
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depends_on('py-python-dateutil', type=('build', 'run'))
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with when('+tests'):
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depends_on('py-beautifulsoup4', type=('build', 'run'))
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depends_on('py-httpretty@0.9.4:', type=('build', 'run'))
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depends_on('py-nose@1.3.4:', type=('build', 'run'))
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depends_on('py-vcrpy', type=('build', 'run'))
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with when('+metadata-extra'):
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depends_on('py-pyyaml', type=('build', 'run'))
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depends_on('py-mutagen@1.36:', type=('build', 'run'))
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depends_on('py-exifread', type=('build', 'run'))
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depends_on('py-python-xmp-toolkit', type=('build', 'run'))
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depends_on('pil', type=('build', 'run'))
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with when('+duecredit'):
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depends_on('py-duecredit', type=('build', 'run'))
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with when('+full'):
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# all the above
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# downloaders-extra
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depends_on('py-requests-ftp', type=('build', 'run'))
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# misc
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depends_on('py-argcomplete', type=('build', 'run'), when='@0.14.7:')
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depends_on('py-pyperclip', type=('build', 'run'))
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depends_on('py-python-dateutil', type=('build', 'run'))
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# tests
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depends_on('py-beautifulsoup4', type=('build', 'run'))
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depends_on('py-httpretty@0.9.4:', type=('build', 'run'))
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depends_on('py-nose@1.3.4:', type=('build', 'run'))
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depends_on('py-vcrpy', type=('build', 'run'))
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# metadata-extra
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depends_on('py-pyyaml', type=('build', 'run'))
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depends_on('py-mutagen@1.36:', type=('build', 'run'))
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depends_on('py-exifread', type=('build', 'run'))
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depends_on('py-python-xmp-toolkit', type=('build', 'run'))
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depends_on('pil', type=('build', 'run'))
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# duecredit
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depends_on('py-duecredit', type=('build', 'run'))
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install_time_test_callbacks = ['test', 'installtest']
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def installtest(self):
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datalad = Executable(self.prefix.bin.datalad)
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datalad('wtf')
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