60 lines
3.0 KiB
Python
60 lines
3.0 KiB
Python
# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RMsnbase(RPackage):
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"""Base Functions and Classes for Mass Spectrometry and Proteomics.
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MSnbase provides infrastructure for manipulation, processing and
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visualisation of mass spectrometry and proteomics data, ranging from raw
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to quantitative and annotated data."""
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bioc = "MSnbase"
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version('2.20.4', commit='c86ac8b341832f2b577f2153258c1abf064e6448')
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version('2.16.1', commit='4d88b4edd1af59474462b1b06ad0ec5831f3a878')
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version('2.10.1', commit='4d5899bc9c714f0b1a70cddd537cd4621b2b53b0')
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version('2.8.3', commit='ef883752c5e92d445647bc5b5d23d5df320db415')
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version('2.6.4', commit='46836860ce0281eef135303f2e2948303d67f68c')
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version('2.4.2', commit='c045d65daa730c7837852e6343a05cae9644ab5e')
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version('2.2.0', commit='d6e8fb7f106d05096fa9074da0f829ac8f02c197')
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depends_on('r@3.1:', type=('build', 'run'))
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depends_on('r@3.5:', type=('build', 'run'), when='@2.16.1:')
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depends_on('r-biocgenerics@0.7.1:', type=('build', 'run'))
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depends_on('r-biobase@2.15.2:', type=('build', 'run'))
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depends_on('r-mzr@2.7.6:', type=('build', 'run'))
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depends_on('r-mzr@2.11.11:', type=('build', 'run'), when='@2.4.2:')
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depends_on('r-mzr@2.13.6:', type=('build', 'run'), when='@2.6.4:')
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depends_on('r-mzr@2.15.1:', type=('build', 'run'), when='@2.8.3:')
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depends_on('r-mzr@2.17.3:', type=('build', 'run'), when='@2.10.1:')
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depends_on('r-mzr@2.19.6:', type=('build', 'run'), when='@2.16.1:')
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depends_on('r-s4vectors', type=('build', 'run'))
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depends_on('r-protgenerics@1.5.1:', type=('build', 'run'))
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depends_on('r-protgenerics@1.19.3:', type=('build', 'run'), when='@2.16.1:')
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depends_on('r-protgenerics@1.25.1:', type=('build', 'run'), when='@2.20.4:')
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depends_on('r-mscoreutils', type=('build', 'run'), when='@2.20.4:')
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depends_on('r-biocparallel', type=('build', 'run'))
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depends_on('r-iranges', type=('build', 'run'))
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depends_on('r-iranges@2.13.28:', type=('build', 'run'), when='@2.6.4:')
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depends_on('r-plyr', type=('build', 'run'))
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depends_on('r-vsn', type=('build', 'run'))
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depends_on('r-affy', type=('build', 'run'))
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depends_on('r-impute', type=('build', 'run'))
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depends_on('r-pcamethods', type=('build', 'run'))
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depends_on('r-maldiquant@1.16:', type=('build', 'run'))
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depends_on('r-mzid@1.5.2:', type=('build', 'run'))
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depends_on('r-digest', type=('build', 'run'))
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depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-xml', type=('build', 'run'))
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depends_on('r-scales', type=('build', 'run'), when='@2.6.4:')
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depends_on('r-mass', type=('build', 'run'), when='@2.6.4:')
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depends_on('r-rcpp', type=('build', 'run'))
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depends_on('r-preprocesscore', type=('build', 'run'), when='@:2.16.1')
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