35 lines
1.7 KiB
Python
35 lines
1.7 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class RAcde(RPackage):
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"""Artificial Components Detection of Differentially Expressed Genes
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This package provides a multivariate inferential analysis method for
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detecting differentially expressed genes in gene expression data. It
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uses artificial components, close to the data's principal components but
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with an exact interpretation in terms of differential genetic
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expression, to identify differentially expressed genes while controlling
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the false discovery rate (FDR). The methods on this package are
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described in the vignette or in the article 'Multivariate Method for
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Inferential Identification of Differentially Expressed Genes in Gene
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Expression Experiments' by J. P. Acosta, L. Lopez-Kleine and S. Restrepo
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(2015, pending publication)."""
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homepage = "https://bioconductor.org/packages/acde"
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git = "https://git.bioconductor.org/packages/acde.git"
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version('1.20.0', commit='cefb4f2e2b0ef3c5f51944c0ece7a71294020350')
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version('1.14.0', commit='6017c7436a46f186b2a3cea9d2b93274f6dd3417')
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version('1.12.0', commit='f6ce5926ac915c2d73436f47daf7f9791645dad4')
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version('1.10.0', commit='2c303dec45f3c70bf333a6eacae568a08d5ca010')
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version('1.8.0', commit='f7fc3e1dce958445f920d3b28b56abde70bfb9de')
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version('1.6.0', commit='244c81f435a077bf7895ea565fa6695e8b079f67')
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depends_on('r@3.3:', type=('build', 'run'))
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depends_on('r-boot@1.3:', type=('build', 'run'))
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