..
abinit
ABINIT package: add version 8.10.3 ( #12615 )
2019-08-29 13:59:26 -07:00
abyss
accfft
ack
activeharmony
acts-core
adept-utils
adios
adios2
ADIOS 2.4.0: Add new Deps ( #12414 )
2019-08-15 10:11:35 -05:00
adlbx
adol-c
aegean
aida
alan
albany
albert
alglib
allinea-reports
allpaths-lg
alquimia
alsa-lib
aluminum
amber
amg
amg2013
aml
amp
ampliconnoise
amrex
Balay/amrex 19.08 ( #12287 )
2019-08-05 17:34:01 -05:00
amrvis
andi
angsd
ant
antlr
ants
aoflagger
aom
ape
aperture-photometry
apex
apple-libunwind
applewmproto
appres
apr
apr-util
aragorn
arborx
archer
argobots
argp-standalone
argtable
aria2
new package: aria2 ( #12318 )
2019-08-08 22:36:13 -05:00
arlecore
arm-forge
armadillo
arpack-ng
arrow
asagi
new package: asagi: create package.py ( #11931 )
2019-08-13 11:13:41 -05:00
ascent
asciidoc
asciidoctor
aspa
aspcud
aspect
aspell
aspell6-de
aspell6-en
aspell6-es
aspera-cli
assimp
astra
astral
astyle
at-spi2-atk
at-spi2-core
atk
bugfix: atk build requires libffi to detect glib
2019-08-29 11:00:01 -07:00
atlas
Overhaul numpy package ( #12170 )
2019-08-06 18:20:23 -05:00
atom-dft
atompaw
atop
augustus
autoconf
autodock-vina
autofact
autogen
automaded
automake
awscli
axel
axl
bamdst
bamtools
bamutil
barrnap
bash
bash-completion
bats
bazel
bbcp
bbmap
bc
bcftools
bcl2fastq2
bdftopcf
bdw-gc
bear
beast1
beast2
beast-tracer
bedops
bedtools2
beforelight
benchmark
berkeley-db
bertini
bib2xhtml
bigreqsproto
binutils
Added checksum for binutils@2.32 ( #12350 )
2019-08-08 23:56:41 -05:00
bioawk
biobloom
biopieces
bismark
bison
bitmap
blasr
blasr-libcpp
blast2go
blast-legacy
blast-plus
blat
blaze
blaze: converted to CMakePackage ( #12357 )
2019-08-12 14:47:54 -05:00
blis
bliss
blitz
bmake
bmi
bml
bohrium
bolt
Update BOLT package ( #12423 )
2019-08-14 21:40:51 -05:00
bookleaf-cpp
boost
boostmplcartesianproduct
bowtie
bowtie package: add version 1.2.3 ( #12593 )
2019-08-28 18:46:22 -07:00
bowtie2
boxlib
bpp-core
bpp-phyl
bpp-seq
bpp-suite
bracken
braker
branson
breakdancer
breseq
bridger
brigand
brotli
bsseeker2
bucky
bumpversion
busco
butter
butterflypack
ButterflyPACK package: add URL, versions 1.0.0 and 1.0.1 ( #12428 )
2019-08-21 17:23:18 -07:00
bwa
bwtool
byobu
bzip2
c-blosc
c-blosc package: Add -std=gnu99 flag for gcc ( #11959 )
2019-08-05 18:04:16 -07:00
c-blosc2
New package: c-blosc2 ( #12430 )
2019-08-21 17:52:05 -07:00
c-lime
cabana
caffe
cairo
cairo: add gobject variant ( #12568 )
2019-08-27 10:29:50 +02:00
cairomm
caliper
callpath
camellia
camx
camx: add version 6.50 ( #12437 )
2019-08-15 19:07:22 -05:00
candle-benchmarks
cantera
Add version 2.4.0 for cantera. ( #12405 )
2019-08-13 19:18:38 -05:00
canu
cap3
capstone
cardioid
cares
casacore
cask
casper
catalyst
catch
cbench
cblas
cbtf
cbtf-argonavis
cbtf-argonavis-gui
cbtf-krell
cbtf-lanl
ccache
ccfits
cctools
cdbfasta
cdd
cddlib
cdecimal
cdhit
cdo
ceed
cereal
ceres-solver
cfitsio
cgal
cgdb
cgm
cgns
channelflow
chapel
charliecloud
Fix charliecloud dependencies ( #12427 )
2019-08-14 19:14:00 -05:00
charmpp
chatterbug
check
chill
Chill package: build fixes ( #12249 )
2019-08-21 18:39:06 -07:00
chlorop
chombo
chrpath
cinch
circos
cistem
citcoms
cityhash
clamav
clamr
clapack
claw
Add version 2.0 ( #12545 )
2019-08-23 10:30:39 -05:00
cleaveland4
cleverleaf
clfft
clhep
clingo
cln
cloc
cloog
cloverleaf
cloverleaf3d
clp
clustalo
clustalw
cmake
cmocka
cmor
cnmem
cnpy
cntk
cntk1bitsgd
cnvnator
codar-cheetah
codes
coevp
cohmm
coinhsl
colm
colordiff
comd
commons-lang
commons-lang3
commons-logging
compiz
compositeproto
conduit
connect-proxy
constype
converge
coreutils
corset
cosmomc
cosp2
cotter
cowsay
cp2k
CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL ( #11418 )
2019-08-13 19:59:08 +02:00
cppad
cppcheck
cppgsl
cpprestsdk
cppunit
cppzmq
cpu-features
cpuinfo
cquery
cram
cromwell
new package: Cromwell ( #12309 )
2019-08-08 22:39:00 -05:00
cromwell-womtool
new package: Cromwell ( #12309 )
2019-08-08 22:39:00 -05:00
cryptopp
cscope
csdp
ctffind
cub
cube
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
cubelib
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
cubew
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
cuda
cuda: add conflict with macOS Mojave ( #12570 )
2019-08-27 10:36:07 -07:00
cuda-memtest
cudnn
cufflinks
cups
curl
cvs
czmq
dakota
daligner
damageproto
damaris
damselfly
darshan-runtime
darshan-util
dash
datamash
dataspaces
dateutils
davix
dbcsr
dbus
dcmtk
dd4hep
dealii
dealii-parameter-gui
deconseq-standalone
dejagnu
delly2
denovogear
dftfe
dia
dialign-tx
diamond
diffsplice
diffutils
dimemas
direnv
discovar
discovardenovo
dislin
diy
dlpack
dmd
dmlc-core
dmtcp
dmxproto
docbook-xml
docbook-xsl
dos2unix
dotnet-core-sdk
double-conversion
doxygen
draco
dri2proto
dri3proto
ds
dsdp
dsrc
dtcmp
dyninst
dysco
ea-utils
easybuild
ebms
eccodes
eccodes package: apply cmake-patch only when @:2.10 ( #12512 )
2019-08-23 15:09:28 -07:00
ecflow
eclipse-gcj-parser
ecp-io-sdk
ecp-io-sdk: add UnifyFS and VeloC ( #12486 )
2019-08-23 14:14:11 -04:00
ecp-proxy-apps
ecp-viz-sdk
ed
editline
editres
eem
New package: EEM ( #12321 )
2019-08-22 16:05:22 -07:00
eigen
elasticsearch
elemental
elfutils
elk
elmer-fem
elpa
elpa package: add version 2018.11.001 ( #12645 )
2019-08-29 14:06:42 -07:00
elsd
elsdc
elsi
emacs
emacs package: add version 26.2, jpeg dependency ( #12632 )
2019-08-29 14:04:09 -07:00
ember
emboss
enchant
enchant@2.2.5: new package ( #12349 )
2019-08-08 22:50:06 -05:00
energyplus
entrezdirect
environment-modules
eospac
eqr
er
erfa
ermod
erne
es
esmf
ESMF & NCL packages: Bug fixes for Intel Compilers ( #11923 )
2019-08-23 17:16:09 -07:00
essl
ethminer
etsf-io
everytrace
everytrace-example
evieext
exabayes
examinimd
exampm
exasp2
exchanger
exiv2
new package: Exiv2
2019-08-21 16:47:13 -07:00
exmcutils
exodusii
exonerate
expat
expect
express
extrae
exuberant-ctags
eztrace
f18
f90cache
fabtests
falcon
faodel
fast-global-file-status
fasta
fastjar
fastmath
fastme
fastphase
fastq-screen
fastqc
fastqvalidator
fasttree
fastx-toolkit
fenics
fermi
fermikit
fermisciencetools
ferret
ffmpeg
fftw
fgsl
figtree
fimpute
findutils
fio
fish
fixesproto
flac
flang
flann
flash
flatbuffers
flatcc
flatcc: add version 0.5.3 ( #12358 )
2019-08-09 21:32:10 -05:00
flecsale
flecsi
Correcting FleCSI package ( #12629 )
2019-08-28 19:44:45 -06:00
flecsph
Adding FleCSPH package. ( #12525 )
2019-08-27 14:50:31 -06:00
flex
flint
flit
fltk
fltk: fix about variable types ( #12292 )
2019-08-06 11:07:27 -07:00
flux-core
flux-sched
fluxbox
fmt
foam-extend
folly
font-util
fontcacheproto
fontconfig
fontsproto
fonttosfnt
fp16
fpc
fqtrim
fr-hit
freebayes
freeglut
freetype
freexl
fseq
fsl
fslsfonts
fstobdf
fstrack
ftgl
funhpc
fyba
fzf
g4abla
g4emlow
g4ensdfstate
g4ndl
g4neutronxs
g4photonevaporation
g4pii
g4radioactivedecay
g4realsurface
g4saiddata
g4tendl
gapbs
gapcloser
gapfiller
gasnet
gatk
gaudi
gaussian
gawk
gblocks
gcc
gcc: Add 9.2.0 ( #12411 )
2019-08-13 19:08:12 -05:00
gccmakedep
gccxml
gconf
gcta
gdal
gdb
gdbm
gdk-pixbuf
gdl
geant4
geant4-data
gearshifft
gemmlowp
genemark-et
genomefinisher
genometools
geopm
geos
gettext
gflags
ghost
ghostscript
ghostscript-fonts
giflib
ginkgo
ginkgo: add maintainers ( #12273 )
2019-08-04 20:36:04 -05:00
git
git-fat-git
git-imerge
git-lfs
gl2ps
glew
glfmultiples
glib
glibmm
glimmer
glm
global
globalarrays
globus-toolkit
glog
gloo
glpk
glproto
glvis
gmake
gmap-gsnap
gmime
gmodel
gmp
gmsh
gmt
gmtsar
gnat
gnome-common
gnome-common: new package ( #12359 )
2019-08-09 21:31:47 -05:00
gnu-prolog
gnupg
gnuplot
gnutls
go
Go package: add version 1.12.9 ( #12496 )
2019-08-23 15:00:44 -07:00
go-bootstrap
go-md2man
New package: go-md2man ( #12397 )
2019-08-14 12:56:51 -05:00
gobject-introspection
gobject-introspection: add GIR file search path ( #12564 )
2019-08-24 09:44:20 -07:00
googletest
gotcha
gource
gperf
gperftools
gpgme
Fix package gpgme dependency ( #12410 )
2019-08-13 19:08:50 -05:00
gplates
grackle
gradle
grandr
graph500
graphicsmagick
graphlib
graphmap
graphviz
graphviz package: add MacOS fixes and quartz support ( #11128 )
2019-08-06 16:26:45 -07:00
grass
Package/grass: fix iconv linking issue ( #12165 )
2019-08-12 13:45:05 -07:00
grib-api
grnboost
groff
gromacs
package/gromacs: simd optimizations autodetection for more versions ( #12402 )
2019-08-13 19:21:59 -05:00
gsl
gslib
gtkmm
gtkorvo-atl
gtkorvo-cercs-env
gtkorvo-dill
gtkorvo-enet
gtkplus
gtksourceview
gtksourceview: add GIR file search path ( #12569 )
2019-08-27 10:32:44 +02:00
gts
guidance
guile
guile: add versions 2.2.1 through 2.2.6 ( #12333 )
2019-08-08 22:22:17 -05:00
gurobi
h5hut
h5part
h5utils
h5z-zfp
hacckernels
hadoop
halc
hapcut2
hapdip
haploview
harfbuzz
harminv
hc
hdf
hdf5
hdf5: patch out mpicxx lib when +mpi~cxx fixes #12586 ( #12640 )
2019-08-28 21:49:52 -05:00
hdf5-blosc
help2man
henson
hepmc
heppdt
hic-pro
highfive
highwayhash
hiop
hisat2
hisea
hisea: build on ARM. ( #12302 )
2019-08-08 22:45:23 -05:00
hmmer
homer
hoomd-blue
hotspot
hpccg
hpctoolkit
hpctoolkit: tighten some dependencies
2019-08-29 14:07:16 -07:00
hpcviewer
hpcviewer: add version 2019.08
2019-08-21 16:30:15 -07:00
hpgmg
hpl
hpx
hpx5
hsakmt
hstr
htop
htslib
httpie
hub
hugo
hunspell
bugfix: hunspell: add missing gettext dependency ( #12347 )
2019-08-09 10:17:57 -05:00
hwloc
hybpiper
hydra
hydrogen
hyphy
hypre
hypre@2.17.0: new version ( #12562 )
2019-08-24 09:43:57 -07:00
i3
ibm-java
ibmisc
iceauth
icedtea
icet
ico
icu4c
Update icu4c to version 64.1 ( #12429 )
2019-08-14 22:54:37 -05:00
id3lib
idba
iegenlib
Fixed broken iegenlib package ( #12229 )
2019-08-09 10:14:17 -05:00
igraph
igvtools
ilmbase
image-magick
imake
imp
impute2
infernal
inputproto
intel
intel-daal
intel-gpu-tools
intel-ipp
intel-mkl
intel-mkl-dnn
intel-mpi
intel-parallel-studio
intel-pin
intel-tbb
intel-xed
interproscan
intltool
ioapi
ior
iozone
iperf2
iperf3
ipopt
isaac
isaac-server
isl
itstool
itsx
jackcess
jags
jansson
jasper
jbigkit
jchronoss
jdk
jellyfish
jemalloc
jmol
jq
json-c
json-cwx
json-fortran
json-fortran: add new version 7.1.0
2019-08-26 18:47:56 -07:00
json-glib
jsoncpp
jube
Set default resource manager to 'none' ( #12092 )
2019-08-02 19:23:14 -05:00
judy
julia
Julia package: add ARM support and versions 1.1.1, 1.0.0 ( #12300 )
2019-08-23 16:29:14 -07:00
k8
kahip
kaiju
kaks-calculator
kaldi
kallisto
karma
kbproto
kdiff3
kealib
kentutils
kibana
kim-api
kim-api: added version 2.1.3 ( #12457 )
2019-08-20 16:29:17 +02:00
kitty
kmergenie
kokkos
Add Kokkos 2.9.0 ( #12466 )
2019-08-20 13:07:11 +02:00
kraken
krb5
krims
kripke
kvasir-mpl
kvtree
ladot
laghos
lame
lammps
lammps: add version 20190807 ( #12424 )
2019-08-14 17:35:24 -05:00
last
lastz
laszip
new package: laszip ( #12432 )
2019-08-15 19:07:40 -05:00
latte
launchmon
lazyten
lbann
lbxproxy
lbzip2
lcals
lcms
ldc
ldc-bootstrap
legion
lemon
leveldb
lftp
libaec
libaio
libapplewm
libarchive
libassuan
libatomic-ops
libbeagle
libbeato
libbsd
libbson
libcanberra
libcap
libceed
libcerf
libcheck
libcint
libcircle
libconfig
libconfig: add version 1.7.1 ( #12324 )
2019-08-10 11:08:53 -05:00
libcroco
libctl
libdivsufsort
libdmx
libdrm
libdwarf
libeatmydata
libedit
libelf
libemos
libepoxy
libev
libevent
libevpath
libfabric
libfabric package: add kdreg variant (off by default) ( #12521 )
2019-08-22 17:02:56 -07:00
libffi
libffs
libfive
Add new package: libfive@master ( #12334 )
2019-08-09 18:10:00 -05:00
libflame
modified: var/spack/repos/builtin/packages/libflame/package.py ( #12379 )
2019-08-10 11:48:58 -05:00
libfontenc
libfs
libgcrypt
libgd
libgeotiff
libgit2
libglvnd
new package: libglvnd ( #12183 )
2019-08-22 14:08:07 -04:00
libgpg-error
libgpuarray
libgridxc
libgtextutils
libharu
libhio
libiberty
libice
libiconv
libidn2
libint
libjpeg
libjpeg-turbo
libksba
liblbxutil
liblockfile
libmad
libmatheval
libmaxminddb
libmesh
libmng
libmo-unpack
libmongoc
libmonitor
libnbc
libnl
libnova
libnrm
libnsl
libogg
liboldx
libpcap
libpciaccess
libpfm4
libpipeline
libplist
libpmemobj-cpp
libpng
libpsl
libpthread-stubs
libquo
librom
librsvg
librsvg: new package ( #12567 )
2019-08-27 10:30:45 +02:00
libseccomp
libsecret
New package: libsecret ( #12461 )
2019-08-21 16:20:26 -07:00
libsharp
libshm
libsigcpp
libsigsegv
libsm
libsodium
libspatialindex
libspatialite
libsplash
libssh
libssh2
libsvm
libszip
libtasn1
libtermkey
libtiff
libtirpc
libtomlc99
libtool
libunistring
libunwind
libusb
libusbmuxd
libuuid
libuv
libvdwxc
libvorbis
libvterm
libwebsockets
libwindowswm
libx11
libxau
libxaw
libxaw3d
libxc
libxcb
libxcomposite
libxcursor
libxdamage
libxdmcp
libxevie
libxext
libxfixes
libxfont
libxfont2
libxfontcache
libxft
libxi
libxinerama
libxkbcommon
libxkbfile
libxkbui
libxml2
libxml2: pass location for libiconv to build system ( #12588 )
2019-08-27 09:29:01 -06:00
libxmu
libxp
libxpm
libxpresent
libxprintapputil
libxprintutil
libxrandr
libxrender
libxres
libxscrnsaver
libxshmfence
libxslt
libxsmm
libxstream
libxt
libxtrap
libxtst
libxv
libxvmc
libxxf86dga
libxxf86misc
libxxf86vm
libyaml
libyogrt
libzip
liggghts
lighttpd
likwid
linkphase3
linux-headers
listres
llvm
Solve compilation error on summit. ( #12305 )
2019-08-16 15:27:35 -04:00
llvm-openmp
llvm-openmp-ompt
lm-sensors
lmdb
lmod
lndir
log4cplus
log4cxx
loki
lordec
lrslib
lrzip
lsf
lsof
ltrace
lua
lua-bitlib
lua-jit
lua-lpeg
lua-luafilesystem
lua-luaposix
lua-mpack
luit
lulesh
lumpy-sv
lvm2
New package: device-mapper ( #12406 )
2019-08-14 14:54:15 -05:00
lwgrp
lwm2
lz4
lzma
lzo
m4
macsio
mad-numdiff
mafft
magics
magma
Add version 2.5.1 of MAGMA released today ( #12274 )
2019-08-04 20:36:48 -05:00
makedepend
mallocmc
man-db
manta
mapserver
maq
margo
mariadb
mariadb-c-client
masa
masurca
masurca: build on arm. ( #12416 )
2019-08-14 10:38:50 -05:00
mathematica
matio
matlab
maven
maverick
mawk
mbedtls
mc
mc package: add version 4.8.23 ( #12605 )
2019-08-29 13:58:10 -07:00
mcl
mdtest
med
meep
mefit
megadock
megahit
memaxes
meme
memkind
memsurfer
meraculous
mercurial
mercury
mercury: Fix CMake 3.15 configure error ( #12504 )
2019-08-21 13:28:20 -04:00
mesa
mesa-glu
meshkit
meson
mesquite
metabat
metaphysicl
metis
mfem
mgis
microbiomeutil
migrate
mii
minced
mindthegap
miniaero
miniamr
miniasm
miniconda2
miniconda3
minife
minighost
minigmg
minimap2
minimd
miniqmc
minisign
minismac2d
minitri
minivite
minixyce
minuit
mira
mirdeep2
mitofates
mitos
mixcr
mkfontdir
mkfontscale
mlhka
mmg
moab
Fix build for moab 4.9.2 on gcc8 ( #12328 )
2019-08-10 11:08:13 -05:00
modern-wheel
mofem-cephas
mofem-fracture-module
mofem-minimal-surface-equation
mofem-users-modules
molcas
mongo-cxx-driver
mono
montage
mosh
mothur
motif
Motif package: add jpeg dependency ( #12559 )
2019-08-26 18:52:22 -07:00
motioncor2
mount-point-attributes
mozjs
mpark-variant
mpc
mpdecimal
mpe2
mpest
mpfr
mpibash
mpiblast
mpich
mpifileutils
mpilander
mpileaks
mpip
mpir
mpix-launch-swift
mrbayes
mrnet
mrtrix3
mscgen
msgpack-c
mshadow
msmc
multitail
multitime
multiverso
mummer
mumps
munge
muparser
muscle
muse
musl
prefix -> self.prefix ( #12487 )
2019-08-20 16:41:41 -05:00
muster
mutationpp
mvapich2
mvapich2 depends on slurm when built with process_managers=slurm ( #12489 )
2019-08-20 16:43:28 -05:00
mxml
mxnet
mysql
nag
nalu
nalu-wind
namd
NAMD package: add version 2.13 ( #12616 )
2019-08-29 14:00:06 -07:00
nano
nanoflann
nanopb
nasm
nauty
ncbi-magicblast
ncbi-rmblastn
ncbi-toolkit
ncbi-toolkit: add version 22_0_0 ( #12278 )
2019-08-07 14:18:36 -05:00
nccl
NCCL: fix build on older Linux systems ( #12415 )
2019-08-14 12:34:00 -05:00
nccmp
ncdu
ncftp
ncl
ESMF & NCL packages: Bug fixes for Intel Compilers ( #11923 )
2019-08-23 17:16:09 -07:00
nco
ncurses
ncurses: fix pic and opt flags ( #12272 )
2019-08-06 22:21:25 -05:00
ncview
ndiff
nek5000
nekbone
nekcem
nektar
nektools
neovim
nest
netcdf
netcdf-cxx
netcdf-cxx4
netcdf-cxx4: add m4 dep for call to autoreconf ( #12325 )
2019-08-08 22:29:42 -05:00
netcdf-fortran
netgauge
netgen
netlib-lapack
Apply xl patch for cce@9: to fix cmake. ( #12392 )
2019-08-12 14:41:00 -05:00
netlib-scalapack
netlib-xblas
nettle
neuron
nextflow
nfft
nghttp2
nginx
ngmlr
nim
ninja
ninja-fortran
nix
nlohmann-json
nlohmann-json: v3.7.0 ( #12517 )
2019-08-22 20:32:06 +02:00
nlopt
nmap
nnvm
node-js
notmuch
npb
npm
npth
nrm
nseg
nspr
ntpoly
numactl
numdiff
nut
nvptx-tools
nwchem
nyancat
ocaml
occa
oce
oclint
oclock
octave
octave-optim
octave-splines
octave-struct
octopus
of-catalyst
of-precice
omega-h
ompss
ompt-openmp
oniguruma
ont-albacore
opa-psm2
patch opa-psm2 to build with spack wrappers ( #12407 )
2019-08-13 19:13:21 -05:00
opam
opari2
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
openbabel
openblas
openblas: fix target detection for cross-compiling ( #12390 )
2019-08-12 14:43:04 -05:00
opencoarrays
opencv
openexr
openfast
openfdtd
New package: openfdtd ( #12498 )
2019-08-27 16:32:18 -07:00
openfoam
openfoam-org
openfst
opengl
openglu
openimageio
openjdk
openjpeg
openkim-models
openmc
openmpi
opennurbs
openpa
openpmd-api
openPMD-api package: require newer nlohmann-json ( #12546 )
2019-08-23 17:26:54 -07:00
openscenegraph
openslide
openspeedshop
openspeedshop-utils
openssh
openssl
openssl package: add versions including 1.1.1c ( #12342 )
2019-08-08 17:04:53 -07:00
openstf
openstf: new package ( #12538 )
2019-08-23 10:40:09 -05:00
opium
optional-lite
opus
orca
orfm
orthofiller
orthofinder
orthomcl
osmctools
osu-micro-benchmarks
otf
otf2
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
p4est
p7zip
pacbio-daligner
pacbio-damasker
pacbio-dazz-db
pacbio-dextractor
packmol
pacvim
pagit
pagmo
pal
paml
panda
pandaseq
pango
pangomm
papi
papyrus
paradiseo
parallel
parallel-netcdf
parallel-netcdf package: add version 1.11.2 ( #12502 )
2019-08-23 15:03:25 -07:00
paraver
paraview
paraview: use Spack-built libpng ( #12587 )
2019-08-29 13:18:37 -07:00
parmetis
parmgridgen
parquet
parsimonator
parsplice
partitionfinder
pasta
patch
patchelf
pathfinder
pax-utils
pbbam
pbmpi
pbsuite
pcma
pcre
pcre2
pdf2svg
pdftk
pdsh
pdt
pegtl
pennant
percept
Percept package: add version ( #12434 )
2019-08-21 18:00:41 -07:00
perl
perl-algorithm-diff
perl-app-cmd
perl-array-utils
perl-b-hooks-endofscope
perl-bio-perl
perl-bit-vector
perl-cairo
perl-capture-tiny
perl-carp-clan
perl-cgi
perl-class-data-inheritable
perl-class-inspector
perl-class-load
perl-class-load-xs
perl-clone
perl-clone-choose
perl-compress-raw-bzip2
perl-compress-raw-zlib
perl-config-general
perl-contextual-return
perl-cpan-meta-check
perl-data-dumper
perl-data-optlist
perl-data-stag
perl-dbd-mysql
perl-dbd-sqlite
perl-dbfile
perl-dbi
perl-devel-cycle
perl-devel-globaldestruction
perl-devel-overloadinfo
perl-devel-stacktrace
perl-digest-md5
perl-dist-checkconflicts
perl-encode-locale
perl-eval-closure
perl-exception-class
perl-exporter-tiny
perl-extutils-config
perl-extutils-depends
perl-extutils-helpers
perl-extutils-installpaths
perl-extutils-makemaker
perl-extutils-pkgconfig
perl-file-copy-recursive
perl-file-homedir
perl-file-listing
perl-file-pushd
perl-file-sharedir-install
perl-file-slurp-tiny
perl-file-slurper
perl-file-which
perl-font-ttf
perl-gd
perl-gd-graph
perl-gd-text
perl-gdgraph-histogram
perl-graph
perl-graph-readwrite
perl-hash-merge
perl-html-parser
perl-html-tagset
perl-http-cookies
perl-http-daemon
perl-http-date
perl-http-message
perl-http-negotiate
perl-inline
perl-inline-c
perl-intervaltree
perl-io-compress
perl-io-html
perl-io-sessiondata
perl-io-socket-ssl
perl-io-string
perl-json
perl-libwww-perl
perl-list-moreutils
perl-log-log4perl
perl-logger-simple
perl-lwp
perl-lwp-mediatypes
perl-lwp-protocol-https
perl-math-bezier
perl-math-cdf
perl-math-cephes
perl-math-matrixreal
perl-math-round
perl-math-vecstat
perl-module-build
perl-module-build-tiny
perl-module-implementation
perl-module-runtime
perl-module-runtime-conflicts
perl-moose
perl-mozilla-ca
perl-mro-compat
perl-namespace-clean
perl-net-http
perl-net-scp-expect
perl-net-ssleay
perl-number-format
perl-object-insideout
perl-package-deprecationmanager
perl-package-stash
perl-package-stash-xs
perl-padwalker
perl-parallel-forkmanager
perl-params-util
perl-params-validate
perl-parse-recdescent
perl-pdf-api2
perl-pegex
perl-perl4-corelibs
perl-perl6-slurp
perl-perlio-gzip
perl-perlio-utf8-strict
perl-readonly
perl-regexp-common
perl-scalar-list-utils
perl-scalar-util-numeric
perl-set-intspan
perl-soap-lite
perl-star-fusion
perl-statistics-basic
perl-statistics-descriptive
perl-statistics-pca
perl-sub-exporter
perl-sub-exporter-progressive
perl-sub-identify
perl-sub-install
perl-sub-name
perl-sub-uplevel
perl-svg
perl-swissknife
perl-task-weaken
perl-term-readkey
perl-test-cleannamespaces
perl-test-deep
perl-test-differences
perl-test-exception
perl-test-fatal
perl-test-memory-cycle
perl-test-most
perl-test-needs
perl-test-requires
perl-test-requiresinternet
perl-test-warn
perl-test-warnings
perl-text-csv
perl-text-diff
perl-text-format
perl-text-simpletable
perl-text-soundex
perl-text-unidecode
perl-time-hires
perl-time-piece
perl-try-tiny
perl-uri
perl-uri-escape
perl-version
perl-want
perl-www-robotrules
perl-xml-parser
perl-xml-parser-lite
perl-xml-simple
perl-yaml
perl-yaml-libyaml
petsc
petsc: update url to gitlab ( #12506 )
2019-08-22 12:40:47 -05:00
pexsi
pfft
pflotran
pfunit
pgdspider
pgi
pgmath
phantompeakqualtools
phast
phasta
phist
phrap-crossmatch-swat
phred
phylip
phyluce
picard
picsar
picsarlite
pidx
pigz
pilon
pindel
piranha
pism
pixman
pkg-config
pkgconf
planck-likelihood
plasma
Version 19.8.1 of PLASMA ( #12299 )
2019-08-07 00:08:59 -05:00
platypus
plink
New Plink beta version ( #12352 )
2019-08-09 10:22:18 -05:00
plplot
plumed
pmdk
pmgr-collective
pmix
pnfft
pngwriter
pnmpi
poamsa
pocl
polymake
poppler
New package: TexStudio ( #12301 )
2019-08-12 14:48:28 -05:00
poppler-data
porta
portage
portage: fix linkage against openblas ( #12641 )
2019-08-29 07:14:13 -06:00
portcullis
postgresql
powerapi
ppl
pplacer
prank
precice
preCICE: Fix Eigen include directory ( #12441 )
2019-08-16 09:00:01 -05:00
presentproto
preseq
price
primer3
prinseq-lite
printproto
prng
probconsrna
prodigal
proj
protobuf
proxymngr
prrte
pruners-ninja
ps-lite
psi4
pslib
psm
psmc
pstreams
pugixml
pumi
pumi: new version 2.2.1 ( #12282 )
2019-08-06 22:09:46 -05:00
pv
pvm
pxz
py-3to2
py-4suite-xml
py-abipy
py-absl-py
py-adios
py-advancedhtmlparser
py-aenum
py-affine
py-alabaster
py-alembic
py-antlr4-python3-runtime
py-apache-libcloud
py-apipkg
package/py-apipkg add new version, add sha256 sums ( #12260 )
2019-08-03 18:38:34 -05:00
py-appdirs
py-appnope
py-apscheduler
py-argcomplete
py-argparse
py-ase
py-asn1crypto
py-astor
py-astroid
py-astropy
py-astunparse
py-async-generator
py-atomicwrites
py-attrs
py-autopep8
py-avro
py-avro-json-serializer
py-babel
py-backcall
py-backports-abc
py-backports-functools-lru-cache
py-backports-shutil-get-terminal-size
py-backports-ssl-match-hostname
py-backports-tempfile
new package: py-backports-tempfile ( #12261 )
2019-08-04 16:10:24 -05:00
py-backports-weakref
new package: py-backports-weakref ( #12262 )
2019-08-03 18:37:10 -05:00
py-basemap
py-bcbio-gff
py-beautifulsoup4
py-binwalk
py-biom-format
py-biomine
py-biopython
py-bitarray
py-bitstring
py-black
py-bleach
py-blessed
py-blessings
py-blinker
new package: py-blinker ( #12531 )
2019-08-23 11:03:16 -05:00
py-bokeh
py-boltons
py-boto3
py-botocore
py-bottleneck
py-breakseq2
py-breathe
py-brian
py-brian2
py-bsddb3
py-bx-python
py-cachetools
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-cairocffi
py-cartopy
py-cclib
py-cdat-lite
py-cdo
py-certifi
Add py-certifi 2019.6.16 ( #12339 )
2019-08-08 21:57:01 -05:00
py-cf-units
py-cffi
py-cftime
py-chardet
py-checkm-genome
py-cheetah
py-click
py-click-plugins
py-cligj
py-clipboard
Add py-clipboard package ( #12364 )
2019-08-10 11:52:52 -05:00
py-cloudpickle
py-cloudpickle package: add version 1.2.1 ( #12518 )
2019-08-22 16:56:47 -07:00
py-cogent
py-colorama
py-colorlog
new package: py-colorlog ( #12265 )
2019-08-03 18:36:29 -05:00
py-colormath
py-colorpy
new package: py-colorpy ( #12266 )
2019-08-03 18:36:17 -05:00
py-configparser
py-counter
py-cov-core
New package: py-cov-core ( #12526 )
2019-08-23 17:21:08 -07:00
py-coverage
py-cpuinfo
py-crispresso
py-crossmap
py-cryptography
py-csvkit
py-current
py-cutadapt
py-cvxopt
py-cycler
py-cython
py-dask
py-dbf
py-decorator
py-deeptools
py-deeptools: add 3.3.0 ( #12456 )
2019-08-21 16:43:44 -07:00
py-deeptoolsintervals
py-deeptools: add 3.3.0 ( #12456 )
2019-08-21 16:43:44 -07:00
py-dendropy
py-descartes
py-dill
py-discover
py-dlcpar
py-docopt
py-docutils
py-doxypy
py-doxypypy
py-dryscrape
py-dxchange
py-dxfile
py-earthengine-api
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-easybuild-easyblocks
py-easybuild-easyconfigs
py-easybuild-framework
py-ecdsa
New package: py-ecdsa ( #12598 )
2019-08-29 13:57:36 -07:00
py-edffile
py-editdistance
py-elasticsearch
py-elephant
py-emcee
py-empy
new package: py-empy
2019-08-21 17:07:08 -07:00
py-entrypoints
py-enum34
py-epydoc
py-espresso
py-espressopp
py-et-xmlfile
py-eventlet
py-execnet
py-exodus
new package: py-exodus ( #12291 )
2019-08-06 23:11:56 -05:00
py-fallocate
New package: py-fallocate ( #12450 )
2019-08-21 16:51:25 -07:00
py-fastaindex
py-fastcache
New package: py-fastcache ( #12451 )
2019-08-23 15:54:50 -07:00
py-fasteners
py-faststructure
py-filelock
py-filemagic
New package: py-filemagic ( #12452 )
2019-08-23 15:53:09 -07:00
py-fiona
py-fiscalyear
py-flake8
py-flake8-polyfill
py-flask
py-flask-compress
py-flask-socketio
py-flexx
py-flye
py-fn
py-fortranformat
New package: py-fortranformat ( #12459 )
2019-08-21 16:24:34 -07:00
py-fparser
py-freezegun
py-funcsigs
py-functools32
py-future
add new versions ( #12393 )
2019-08-13 19:35:02 -05:00
py-futures
py-fypp
py-gdbgui
py-gee-asset-manager
Add py-gee-asset-manager package ( #12365 )
2019-08-10 11:52:38 -05:00
py-geeadd
Add py-geeadd package ( #12366 )
2019-08-10 11:52:24 -05:00
py-geeup
Add py-geeup package ( #12367 )
2019-08-10 11:52:10 -05:00
py-genders
py-genshi
py-geoalchemy2
new package: py-geoalchemy2
2019-08-21 16:22:34 -07:00
py-geopandas
py-gevent
py-git2
py-git-review
py-gnuplot
py-goatools
py-google-api-core
Add py-google-api-core package ( #12368 )
2019-08-10 11:51:56 -05:00
py-google-api-python-client
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-google-auth
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-google-auth-httplib2
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-google-cloud-core
Add py-google-cloud-core package ( #12369 )
2019-08-10 11:51:41 -05:00
py-google-cloud-storage
Add py-google-cloud-storage package ( #12370 )
2019-08-10 11:51:27 -05:00
py-google-resumable-media
Add py-google-resumable-media package ( #12371 )
2019-08-10 11:51:12 -05:00
py-googleapis-common-protos
Add py-googleapis-common-protos package ( #12372 )
2019-08-10 11:50:58 -05:00
py-gpaw
py-graphviz
py-greenlet
py-grequests
new package: py-grequests
2019-08-21 17:50:17 -07:00
py-griddataformats
py-guidata
py-guiqwt
py-h5glance
py-h5py
py-hdfs
py-hepdata-validator
py-hpccm
py-html2text
py-html5lib
py-htseq
py-httpbin
py-httplib2
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-humanize
new package: py-humanize
2019-08-21 16:10:51 -07:00
py-hypothesis
py-idna
py-igraph
py-illumina-utils
py-imageio
py-imagesize
py-iminuit
py-importlib
py-invoke
py-ipaddress
py-ipdb
py-ipykernel
py-ipython
py-ipython-genutils
py-ipywidgets
py-isort
py-itsdangerous
py-jdcal
py-jedi
py-jinja2
py-jmespath
py-joblib
py-jprops
py-jpype
py-jsonpatch
py-jsonpointer
py-jsonschema
py-junit-xml
py-jupyter-client
py-jupyter-console
py-jupyter-core
py-jupyter-notebook
py-jupyterhub
py-keras
py-keras-applications
add new version ( #12394 )
2019-08-13 19:34:34 -05:00
py-keras-preprocessing
add new version ( #12395 )
2019-08-13 19:33:12 -05:00
py-kitchen
New package: py-kitchen ( #12464 )
2019-08-23 15:24:10 -07:00
py-kiwisolver
py-kmodes
py-lark-parser
py-latexcodec
py-lazy
py-lazy-object-proxy
py-lazy-property
py-lazyarray
py-libconf
py-libensemble
libensemble package: add version 0.5.2 ( #12514 )
2019-08-27 16:39:43 -07:00
py-line-profiler
py-linecache2
py-lit
py-llvmlite
py-lmfit
py-localcider
py-locket
py-lockfile
py-logilab-common
py-lrudict
py-luigi
py-lxml
py-lzstring
py-m2r
py-macholib
py-machotools
py-macs2
py-maestrowf
py-mako
py-markdown
py-markupsafe
py-matplotlib
Fix py-matplotlib build with Intel compiler ( #12144 )
2019-08-11 12:57:31 -05:00
py-mccabe
py-mdanalysis
py-mechanize
new package: py-mechanize ( #12468 )
2019-08-21 16:17:51 -07:00
py-meep
Overhaul numpy package ( #12170 )
2019-08-06 18:20:23 -05:00
py-memory-profiler
py-merlin
py-metasv
py-methylcode
py-mg-rast-tools
py-misopy
py-mistune
py-mlxtend
py-mo-pack
py-mock
py-modred
py-moltemplate
py-mongo
py-monotonic
py-monty
py-more-itertools
py-mpi4py
py-mpmath
py-multi-key-dict
New package: py-multi-key-dict ( #12508 )
2019-08-22 16:55:11 -07:00
py-multiprocess
py-multiqc
py-munch
py-mx
py-mxnet
py-myhdl
py-mysql-connector
py-mysqlclient
New package: py-mysqlclient ( #12594 )
2019-08-29 13:49:50 -07:00
py-mysqldb1
py-natsort
py-nbconvert
py-nbformat
py-nc-time-axis
py-neo
py-nestle
py-netcdf4
py-netifaces
py-networkx
py-nose
py-nose2
New package: py-nose2 ( #12522 )
2019-08-27 18:18:14 -07:00
py-nosexcover
py-numba
py-numexpr
py-numexpr: switch from PyPI to GitHub download ( #12360 )
2019-08-09 22:27:34 -05:00
py-numexpr3
py-numpy
Add py-numpy 1.17.1 ( #12618 )
2019-08-28 10:32:56 -05:00
py-numpydoc
py-oauth2client
Add py-oauth2client package ( #12373 )
2019-08-10 11:50:43 -05:00
py-olefile
py-onnx
py-ont-fast5-api
py-openpmd-validator
py-openpyxl
py-openslide-python
py-opentuner
py-opppy
New package: py-opppy ( #12483 )
2019-08-23 15:22:31 -07:00
py-ordereddict
py-oset
py-overpy
New package: py-overpy ( #12533 )
2019-08-26 15:44:57 -07:00
py-owslib
py-packaging
py-palettable
py-pandas
py-paramiko
py-partd
py-path-py
new package: py-path-py ( #12534 )
2019-08-23 10:49:14 -05:00
py-pathlib
Add py-pathlib package ( #12374 )
2019-08-10 11:50:24 -05:00
py-pathlib2
py-pathos
py-pathspec
py-patsy
py-pauvre
py-pbr
py-pep8-naming
py-perf
py-performance
py-periodictable
py-petsc4py
py-pexpect
py-phonopy
py-pickleshare
py-picrust
py-pil
py-pillow
py-pint
py-pip
py-pipits
py-pispino
py-pkgconfig
py-planar
New package: py-planar ( #12589 )
2019-08-28 18:25:49 -07:00
py-plotly
py-pluggy
py-ply
py-pmw
py-poster
Port py-poster to Python 3 ( #12363 )
2019-08-10 11:53:15 -05:00
py-pox
py-ppft
py-prettytable
py-progress
py-progressbar2
py-projectq
py-prometheus-client
py-prompt-toolkit
py-protobuf
py-psutil
py-psyclone
py-psycopg2
py-ptyprocess
py-pudb
py-py
py-py2bit
py-py2cairo
py-py2neo
py-py4j
py-pyani
py-pyarrow
py-pyasn1
Add py-pyasn1 0.4.6 ( #12251 )
2019-08-02 20:09:15 -05:00
py-pyasn1-modules
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-pybedtools
py-pybigwig
py-pybind11
py-pybtex
py-pybtex-docutils
py-pycairo
py-pycares
py-pychecker
py-pycodestyle
py-pycparser
py-pycrypto
py-pycuda
New package: py-pycuda ( #12592 )
2019-08-28 18:36:25 -07:00
py-pycurl
py-pydatalog
py-pydispatcher
py-pydot
py-pydot2
New package: py-pydot2 ( #12535 )
2019-08-23 17:49:44 -07:00
py-pydotplus
New package: py-pydotplus ( #12537 )
2019-08-29 10:33:03 -07:00
py-pydv
py-pyelftools
py-pyepsg
py-pyfaidx
py-pyfaidx: tweak dependencies; fixes #12445 ( #12446 )
2019-08-16 22:41:32 -05:00
py-pyfasta
py-pyfftw
py-pyflakes
py-pygdbmi
py-pyglet
new package: py-pyglet
2019-08-28 18:32:51 -07:00
py-pygments
py-pygobject
py-pygpu
py-pygresql
py-pygtk
py-pyjwt
New package: py-pyjwt ( #12532 )
2019-08-26 15:45:56 -07:00
py-pyke
py-pykml
New package: py-pykml ( #12539 )
2019-08-23 17:27:36 -07:00
py-pyliblzma
New package: py-liblzma ( #12549 )
2019-08-27 17:29:10 -07:00
py-pylint
py-pymatgen
py-pyminifier
py-pymol
py-pymorph
New package: py-morph ( #12550 )
2019-08-23 18:08:26 -07:00
py-pympler
py-pymysql
py-pynio
py-pynn
py-pyodbc
py-pyomo
py-pypar
py-pyparsing
py-pypeflow
py-pyperclip
Add py-pyperclip package ( #12375 )
2019-08-10 11:50:10 -05:00
py-pyprof2html
py-pyproj
py-pyqi
py-pyqt4
py-pyqt5
py-pyrad
py-pyrosar
py-pysam
py-pyscaf
py-pyserial
py-pyshp
py-pyside
py-pysmartdl
Add py-pysmartdl package ( #12376 )
2019-08-10 11:49:55 -05:00
py-pysocks
py-pyspark
py-pysqlite
py-pytailf
new package: py-pytailf ( #12542 )
2019-08-23 10:32:50 -05:00
py-pytest
py-pytest-cache
New package: py-pytest-cache ( #12552 )
2019-08-29 10:49:56 -07:00
py-pytest-cov
py-pytest-flake8
py-pytest-httpbin
py-pytest-isort
py-pytest-mock
py-pytest-runner
py-pytest-xdist
py-pythia
py-python-daemon
py-python-dateutil
py-python-engineio
py-python-gitlab
py-python-htmlgen
py-python-jenkins
new package: py-python-jenkins
2019-08-29 13:56:10 -07:00
py-python-levenshtein
py-python-magic
add new package: py-python-magic ( #12409 )
2019-08-14 10:37:06 -05:00
py-python-socketio
py-python-utils
py-pythonqwt
py-pytools
New package: py-pytools ( #12553 )
2019-08-26 19:00:06 -07:00
py-pytz
py-pyudev
New package: py-pyudev ( #12554 )
2019-08-29 10:55:37 -07:00
py-pyugrid
py-pyutilib
py-pyvcf
py-pywavelets
py-pyyaml
py-qtawesome
py-qtconsole
py-qtpy
py-quantities
py-quast
py-queryablelist
py-radical-utils
py-ranger
py-rasterio
py-ratelim
new package: py-ratelim
2019-08-26 18:53:49 -07:00
py-readme-renderer
py-regex
py-reportlab
py-repoze-lru
new package: py-repoze-lru
2019-08-29 10:59:05 -07:00
py-requests
py-requests-futures
new package: py-requests-futures ( #12264 )
2019-08-03 18:36:42 -05:00
py-requests-toolbelt
py-restview
py-retrying
Add py-retrying package ( #12377 )
2019-08-10 11:49:41 -05:00
py-rope
py-rpy2
py-rsa
py-rseqc
py-rtree
py-s3transfer
py-saga-python
py-scandir
py-scientificpython
py-scikit-image
py-scikit-learn
py-scikit-optimize
py-scipy
Add py-scipy 1.3.1 ( #12620 )
2019-08-28 10:32:23 -05:00
py-scoop
py-scp
new package: py-scp
2019-08-26 18:54:32 -07:00
py-seaborn
py-selenium
Add py-selenium package ( #12378 )
2019-08-10 11:49:25 -05:00
py-send2trash
py-setuptools
py-setuptools-git
py-setuptools-scm
py-sfepy
py-sgp4
New package: py-sgp4 ( #12557 )
2019-08-26 18:51:33 -07:00
py-sh
py-shapely
py-shiboken
py-simplegeneric
py-simplejson
py-simplekml
new package: py-simplekml ( #12541 )
2019-08-23 10:33:54 -05:00
py-singledispatch
py-sip
py-six
py-slepc4py
py-slurm-pipeline
py-sncosmo
py-snowballstemmer
py-snuggs
py-spatialist
py-spectra
py-spefile
py-spglib
py-sphinx
py-sphinx-bootstrap-theme
py-sphinx-rtd-theme
py-sphinxautomodapi
py-sphinxcontrib-bibtex
py-sphinxcontrib-programoutput
py-sphinxcontrib-websupport
py-spyder
py-spykeutils
py-sqlalchemy
py-statsmodels
py-stevedore
py-storm
py-stratify
py-subprocess32
py-symengine
py-symfit
py-sympy
py-tables
Re-add py-cython dependency to py-tables ( #12338 )
2019-08-08 21:57:16 -05:00
py-tabulate
py-tappy
py-tblib
py-termcolor
new package: py-termcolor ( #12544 )
2019-08-23 10:31:49 -05:00
py-terminado
py-testinfra
py-tetoolkit
py-texttable
py-theano
py-tifffile
py-toml
py-tomopy
py-toolz
py-torch
Overhaul PyTorch package ( #12420 )
2019-08-15 17:54:09 -05:00
py-torchvision
py-tornado
py-tqdm
py-traceback2
py-traitlets
py-treehash
py-tuiview
py-twisted
py-typesentry
py-typing
py-typing-extensions
py-tzlocal
py-udunits
py-umi-tools
py-unicycler
py-unittest2
py-unittest2py3k
py-uritemplate
Move new packages from tutorial to builtin ( #12289 )
2019-08-05 19:55:39 -05:00
py-urllib3
py-urwid
py-usgs
new package: py-usgs ( #12263 )
2019-08-03 18:36:55 -05:00
py-vcversioner
py-virtualenv
py-virtualenv-clone
py-virtualenvwrapper
py-vsc-base
py-vsc-install
py-wand
New package: py-wand ( #12590 )
2019-08-28 18:32:08 -07:00
py-warlock
py-wcsaxes
py-wcwidth
py-webencodings
py-webkit-server
py-weblogo
py-werkzeug
py-whatshap
py-wheel
py-widgetsnbextension
py-wrapt
py-wxpython
py-xarray
py-xattr
py-xdot
py-xenv
py-xlrd
py-xlsxwriter
py-xmlrunner
py-xopen
py-xpyb
py-xvfbwrapper
py-yamlreader
py-yapf
py-yt
py-ytopt
py-zmq
py-zope-event
py-zope-interface
pythia6
python
qbank
qbox
qca
QCA package: add version 2.2.1 and update CMake args ( #12576 )
2019-08-29 11:47:46 -07:00
qhull
qjson
qjson package: enable building with qt4 ( #12577 )
2019-08-29 11:56:08 -07:00
qmcpack
qmd-progress
qorts
qrupdate
qt
Qt@4.8.7: fix build issue due to +phonon variant, disable phonon backend ( #12579 )
2019-08-29 12:24:17 -05:00
qt-creator
qtgraph
qthreads
qtkeychain
qtkeychain package: enable building with qt4 ( #12578 )
2019-08-29 11:55:11 -07:00
quantum-espresso
quinoa
qwt
Update VisIt to version 3.0.1 and fix on mac ( #12396 )
2019-08-15 10:13:45 -05:00
qwtpolar
new package: qwtpolar ( #12382 )
2019-08-11 12:39:58 -05:00
r
r: added version 3.6.1. ( #12470 )
2019-08-20 11:13:18 +02:00
r3d
r-a4
r-a4base
r-a4classif
r-a4core
r-a4preproc
r-a4reporting
r-abadata
r-abaenrichment
r-abind
r-absseq
r-acde
r-acepack
r-acgh
r-acme
r-ada
r-adabag
r-ade4
r-adegenet
r-adsplit
r-aer
r-affxparser
r-affy
r-affycomp
r-affycompatible
r-affycontam
r-affycoretools
r-affydata
r-affyexpress
r-affyilm
r-affyio
r-affypdnn
r-affyplm
r-affyqcreport
r-affyrnadegradation
r-agdex
r-agilp
r-agimicrorna
r-aims
r-aldex2
r-allelicimbalance
r-alpine
r-als
r-alsace
r-altcdfenvs
r-amap
r-ampliqueso
r-analysispageserver
r-anaquin
r-aneufinder
r-aneufinderdata
r-animation
r-annaffy
r-annotate
r-annotationdbi
r-annotationfilter
r-annotationforge
r-annotationhub
r-ape
r-argparse
r-assertthat
r-backports
r-bamsignals
r-base64
r-base64enc
r-bayesm
r-bbmisc
r-beanplot
r-bfast
r-bfastspatial
r-bglr
r-bh
r-biasedurn
r-bibtex
r-bindr
r-bindrcpp
r-biobase
r-biocgenerics
r-biocinstaller
r-biocparallel
r-biocstyle
r-biom-utils
r-biomart
r-biomformat
r-biostrings
r-biovizbase
r-bit
r-bit64
r-bitops
r-blob
r-blockmodeling
r-bookdown
r-boot
r-brew
r-broom
r-bsgenome
r-bumphunter
r-c50
r-cairo
r-callr
r-car
r-caret
r-caroline
r-category
r-catools
r-cdcfluview
r-cellranger
r-checkmate
r-checkpoint
r-chemometrics
r-chron
r-circlize
r-class
r-classint
r-cli
r-clipr
r-cluster
r-clustergeneration
r-clusterprofiler
r-cner
r-coda
r-codetools
r-coin
r-colorspace
r-combinat
r-commonmark
r-complexheatmap
r-compositions
r-construct
r-convevol
r-corhmm
r-corpcor
r-corrplot
r-covr
r-cowplot
r-crayon
r-crosstalk
r-crul
r-ctc
r-cubature
r-cubist
r-curl
r-data-table
r-dbi
r-dbplyr
r-delayedarray
r-deldir
r-dendextend
r-deoptim
r-deoptimr
r-desc
r-deseq
r-deseq2
r-desolve
r-devtools
r-diagrammer
r-dicekriging
r-dichromat
r-diffusionmap
r-digest
r-diptest
r-dirichletmultinomial
r-dismo
r-diversitree
r-dnacopy
r-do-db
r-domc
r-doparallel
r-dorng
r-dose
r-downloader
r-dplyr
r-dt
r-dtw
r-dygraphs
r-dynamictreecut
r-e1071
r-edger
r-ellipse
r-emmli
r-energy
r-ensembldb
r-ergm
r-evaluate
r-expint
r-expm
r-factoextra
r-factominer
r-fansi
r-fastcluster
r-fastmatch
r-ff
r-fftwtools
r-fgsea
r-filehash
r-findpython
r-fit-models
r-flashclust
r-flexclust
r-flexmix
r-fnn
r-forcats
r-foreach
r-forecast
r-foreign
r-formatr
r-formula
r-fpc
r-fracdiff
r-futile-logger
r-futile-options
r-gamlss
r-gamlss-data
r-gamlss-dist
r-gbm
r-gcrma
r-gdalutils
r-gdata
r-gdsfmt
r-geiger
r-genefilter
r-genelendatabase
r-geneplotter
r-genie3
r-genomeinfodb
r-genomeinfodbdata
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-gensa
r-geomorph
r-geonames
r-geoquery
r-geor
r-geosphere
r-getopt
r-getoptlong
r-ggally
r-ggbio
r-ggdendro
r-ggjoy
r-ggmap
r-ggplot2
r-ggpubr
r-ggrepel
r-ggridges
r-ggsci
r-ggvis
r-gistr
r-git2r
r-glimma
r-glmnet
r-globaloptions
r-glue
r-gmodels
r-gmp
r-go-db
r-googlevis
r-goplot
r-gosemsim
r-goseq
r-gostats
r-gplots
r-graph
r-grbase
r-gridbase
r-gridextra
r-gseabase
r-gss
r-gsubfn
r-gtable
r-gtools
r-gtrellis
r-gviz
r-gwmodel
r-haven
r-hexbin
r-highr
r-hmisc
r-hms
r-hoardr
r-htmltable
r-htmltools
r-htmlwidgets
r-httpcode
r-httpuv
r-httr
r-hwriter
r-hypergraph
r-ica
r-igraph
r-illuminaio
r-impute
r-influencer
r-inline
r-interactivedisplaybase
r-intervals
r-ipred
r-iranges
r-irdisplay
r-irkernel
r-irlba
r-isdparser
r-iso
r-iterators
r-janitor
r-jaspar2018
r-jomo
r-jpeg
r-jsonlite
r-kegg-db
r-kegggraph
r-keggrest
r-kernlab
r-kernsmooth
r-kknn
r-knitr
r-ks
r-labeling
r-lambda-r
r-laplacesdemon
r-lars
r-lattice
r-latticeextra
r-lava
r-lazyeval
r-leaflet
r-leaps
r-learnbayes
r-lhs
r-limma
r-lme4
r-lmtest
r-locfit
r-log4r
r-loo
r-lpsolve
r-lsei
r-lubridate
r-magic
r-magrittr
r-makecdfenv
r-maldiquant
r-manipulatewidget
r-mapproj
r-maps
r-maptools
r-markdown
r-mass
r-matr
r-matrix
r-matrixmodels
r-matrixstats
r-mclust
r-mcmcglmm
r-mco
r-mda
r-memoise
r-mergemaid
r-methodss3
r-mgcv
r-mgraster
r-mice
r-mime
r-minfi
r-miniui
r-minqa
r-misc3d
r-mitml
r-mixtools
r-mlbench
r-mlinterfaces
r-mlr
r-mlrmbo
r-mmwrweek
r-mnormt
r-modelmetrics
r-modelr
r-modeltools
r-mpm
r-msnbase
r-multcomp
r-multicool
r-multitaper
r-multtest
r-munsell
r-mvtnorm
r-mzid
r-mzr
r-nanotime
r-ncbit
r-ncdf4
r-network
r-networkd3
r-nleqslv
r-nlme
r-nloptr
r-nmf
r-nnet
r-nnls
r-nor1mix
r-nortest
r-np
r-numderiv
r-oligoclasses
r-oo
r-openssl
r-optparse
r-org-hs-eg-db
r-organismdbi
r-packrat
r-pacman
r-paleotree
r-pamr
r-pan
r-parallelmap
r-paramhelpers
r-party
r-partykit
r-pathview
r-pbapply
r-pbdzmq
r-pbkrtest
r-pcamethods
r-pcapp
r-permute
r-pfam-db
r-phangorn
r-phantompeakqualtools
r-phyloseq
r-phylostratr
r-phytools
r-picante
r-pillar
r-pkgbuild
r-pkgconfig
r-pkgload
r-pkgmaker
r-plogr
r-plot3d
r-plotly
r-plotrix
r-pls
r-plyr
r-pmcmr
r-png
r-popgenome
r-popvar
r-powerlaw
r-prabclus
r-praise
r-preprocesscore
r-prettyunits
r-processx
r-prodlim
r-progress
r-protgenerics
r-proto
r-proxy
r-pryr
r-ps
r-psych
r-ptw
r-purrr
r-qtl
r-quadprog
r-quantmod
r-quantreg
r-quantro
r-qvalue
r-r6
r-randomfields
r-randomfieldsutils
r-randomforest
r-randomglm
r-ranger
r-rappdirs
r-raster
r-rbgl
r-rbokeh
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rcppblaze
r-rcppcctz
r-rcppcnpy
r-rcppeigen
r-rcppprogress
r-rcurl
r-rda
r-readr
r-readxl
r-registry
r-rematch
r-reordercluster
r-reportingtools
r-repr
r-reprex
r-reshape
r-reshape2
r-rex
r-rgdal
r-rgenoud
r-rgeos
r-rgl
r-rgooglemaps
r-rgraphviz
r-rhdf5
r-rhmmer
r-rhtslib
r-rinside
r-rjags
r-rjava
r-rjson
r-rjsonio
r-rlang
r-rmarkdown
r-rminer
r-rmpfr
r-rmpi
r-rmutil
r-rmutil: new package at 1.1.3 ( #12417 )
2019-08-14 14:53:57 -05:00
r-rmysql
r-rngtools
r-rnoaa
r-robust
r-robustbase
r-rocr
r-rodbc
r-rots
r-roxygen2
r-rpart
r-rpart-plot
r-rpostgresql
r-rprojroot
r-rrblup
r-rrcov
r-rrpp
r-rsamtools
r-rsnns
r-rsolnp
r-rsqlite
r-rstan
r-rstantools
r-rstudioapi
r-rtracklayer
r-rtsne
r-runit
r-rvcheck
r-rvest
r-rzmq
r-s4vectors
r-samr
r-sandwich
r-scales
r-scatterplot3d
r-sdmtools
r-segmented
r-selectr
r-seqinr
r-seqlogo
r-seurat
r-sf
r-sfsmisc
r-shape
r-shiny
r-shinydashboard
r-shortread
r-siggenes
r-simpleaffy
r-sm
r-smoof
r-sn
r-snow
r-snowfall
r-snprelate
r-som
r-somaticsignatures
r-sourcetools
r-sp
r-spacetime
r-sparsem
r-spatial
r-spatialreg
r-spdata
r-spdep
r-speedglm
r-spem
r-splancs
r-splitstackshape
r-sqldf
r-squash
r-sseq
r-stanheaders
r-statmod
r-statnet-common
r-stringi
r-stringr
r-strucchange
r-subplex
r-summarizedexperiment
r-survey
r-survival
r-sva
r-tarifx
r-taxizedb
r-tclust
r-tensora
r-testit
r-testthat
r-tfbstools
r-tfmpvalue
r-th-data
r-threejs
r-tibble
r-tidycensus
r-tidyr
r-tidyselect
r-tidyverse
r-tiff
r-tigris
r-timedate
r-tmixclust
r-topgo
r-triebeard
r-trimcluster
r-truncnorm
r-trust
r-tseries
r-tsne
r-ttr
r-udunits2
r-units
r-urltools
r-utf8
r-utils
r-uuid
r-variantannotation
r-varselrf
r-vcd
r-vegan
r-vfs
r-vgam
r-vipor
r-viridis
r-viridislite
r-visnetwork
r-vsn
r-webshot
r-wgcna
r-whisker
r-withr
r-xde
r-xgboost
r-xlconnect
r-xlconnectjars
r-xlsx
r-xlsxjars
r-xmapbridge
r-xml
r-xml2
r-xnomial
r-xtable
r-xts
r-xvector
r-yaml
r-yapsa
r-yaqcaffy
r-yarn
r-zlibbioc
r-zoo
racon
raft
ragel
raja
raja~openmp: explicitly disable OpenMP in CMake ( #12572 )
2019-08-27 14:00:40 +02:00
randfold
random123
randrproto
range-v3
rankstr
rapidjson
ravel
raxml
ray
rclone
rdma-core
rdp-classifier
rdptools
re2c
re2c package: add version 1.2.1 ( #12455 )
2019-08-21 16:45:19 -07:00
readfq
readline
recon
recordproto
redis
redset
redundans
regcm
relax
relion
rempi
rename
rendercheck
renderproto
repeatmasker
repeatmodeler
repeatscout
resourceproto
revbayes
rgb
rhash
rlwrap
rmats
rmlab
rna-seqc
rngstreams
rocksdb
rockstar
rodinia
root
rose
ross
routino
rpcsvc-proto
rr
rsbench
rsem
rstart
rsync
rtags
rtax
ruby
ruby-gnuplot
ruby-narray
ruby-ronn
ruby-rubyinline
ruby-svn2git
ruby-terminal-table
rust
rust-bindgen
sabre
saga-gis
sailfish
salmon
sambamba
samblaster
samrai
samtools
sandbox
sas
satsuma2
savanna
saws
sbt
scala
scalasca
scallop
scalpel
Scalpel package: remove CMake dependency ( #12631 )
2019-08-29 14:03:12 -07:00
scan-for-matches
scons
scorec-core
scorep
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
scotch
scr
screen
scripts
scrnsaverproto
sctk
sdl2
sdl2: fix dependency for libxext and build on ARM ( #12351 )
2019-08-09 10:24:16 -05:00
sdl2-image
sdsl-lite
seacas
SEACAS package: add fixed versions and adios2 variant ( #12503 )
2019-08-23 15:08:02 -07:00
sed
sentieon-genomics
seqan
seqkit
seqprep
seqtk
serf
sessreg
setxkbmap
sga
shapeit
shared-mime-info
shiny-server
shocklibs
shoremap
shortbred
shortstack
showfont
shuffile
sickle
siesta
signalp
signify
silo
simgrid
simplemoc
simul
simulationio
singularity
singularity: update version to 3.3.0 ( #12295 )
2019-08-12 15:38:15 -05:00
singularity-legacy
sirius
SIRIUS package: add v6.3.2 + Python/MKL support ( #12472 )
2019-08-23 15:51:51 -07:00
skilion-onedrive
skopeo
Fix skopeo dependencies ( #12425 )
2019-08-14 19:14:33 -05:00
sl
slate
sleef
slepc
slepc: update python dependencies to be in sync with petsc ( #12250 )
2019-08-02 20:07:29 -05:00
slurm
smalt
smof
smproxy
snakemake
snap
snap-berkeley
snap-korf
snappy
snbone
sniffles
snpeff
snphylo
snptest
soap2
soapdenovo2
soapdenovo-trans
soapindel
soapsnp
sofa-c
somatic-sniper
sortmerna
sosflow
sowing
sox
spades
span-lite
spark
sparsehash
sparta
spdlog
spectrum-mpi
speex
spglib
sph2pipe
spherepack
spindle
spm
spot
sqlite
sqlitebrowser
squashfs
squid
sra-toolkit
ssht
sspace-longread
sspace-standard
sst-core
sst-dumpi
sst-macro
stacks
staden-io-lib
star
star-ccm-plus
startup-notification
stat
stata
stc
steps
stow
strace
starce: new version and build on ARM. ( #12401 )
2019-08-13 19:38:45 -05:00
stream
strelka
stress
string-view-lite
stringtie
structure
strumpack
sublime-text
subread
subread: build on ARM. ( #12400 )
2019-08-13 19:23:52 -05:00
subversion
suite-sparse
sumaclust
sundials
superlu
superlu-dist
superlu-mt
supernova
sw4lite
swap-assembler
swarm
swfft
swiftsim
swig
Update SWIG versions and add Fortran fork ( #12185 )
2019-08-11 12:58:12 -05:00
symengine
sympol
sz
tabix
talass
talloc
tantan
tar
targetp
task
taskd
tasmanian
tassel
tau
tau package: add version 2.28.2 ( #12524 )
2019-08-23 14:41:28 -07:00
tcl
tcl-itcl
tcl-tcllib
tcl-tclxml
tclap
tcoffee
tcptrace
tcsh
tealeaf
templight
templight-tools
tetgen
tethex
texinfo
texlive
texstudio
New package: TexStudio ( #12301 )
2019-08-12 14:48:28 -05:00
tfel
the-platinum-searcher
the-silver-searcher
thornado-mini
thrift
thrust
tig
time
tinyxml
tinyxml2
tioga
tippecanoe
newpackage/tippecanoe ( #12319 )
2019-08-09 10:18:26 -05:00
tix
tk
tldd
tmalign
tmhmm
tmux
tmuxinator
tophat
tppred
tracer
transabyss
transdecoder
transposome
transset
trapproto
tree
treesub
trf
triangle
trilinos
Generalize STK package settings in Trilinos ( #11917 )
2019-08-07 16:11:15 -05:00
trilinos-catalyst-ioss-adapter
trimal
trimgalore
trimmomatic
trinity
trinotate
trnascan-se
turbine
turbomole
tut
twm
tycho2
typhon
typhonio
uberftp
ucx
udunits2
ufo-core
ufo-filters
umap
umoci
Package umoci dependency ( #12422 )
2019-08-14 17:35:52 -05:00
umpire
unblur
uncrustify
unibilium
unifyfs
UnifyFS: new package - rename from UnifyCR ( #12439 )
2019-08-20 11:13:22 -05:00
unison
units
unittest-cpp
unixodbc
unuran
unzip
usearch
util-linux
util-macros
uuid
uvw
valgrind
vampirtrace
vardictjava
varscan
vc
vcftools
vcsh
vdt
vecgeom
veclibfort
Overhaul numpy package ( #12170 )
2019-08-06 18:20:23 -05:00
vegas2
veloc
velvet
verilator
verrou
videoproto
viennarna
viewres
vigra
vim
virtualgl
visit
Update VisIt to version 3.0.1 and fix on mac ( #12396 )
2019-08-15 10:13:45 -05:00
vizglow
vmatch
voropp
votca-csg
votca-ctp
votca-tools
votca-xtp
vpfft
vpic
vsearch
vt
vtk
Update VisIt to version 3.0.1 and fix on mac ( #12396 )
2019-08-15 10:13:45 -05:00
vtkh
vtkm
wannier90
warpx
wcslib
wget
wgsim
windowswmproto
wireshark
wordnet
workrave
wt
wtdbg2
wxpropgrid
wxwidgets
x11perf
xapian-core
xauth
xbacklight
xbiff
xbitmaps
xbraid
xcalc
xcb-demo
xcb-proto
xcb-util
xcb-util-cursor
xcb-util-errors
xcb-util-image
xcb-util-keysyms
xcb-util-renderutil
xcb-util-wm
xcb-util-xrm
xclip
xclipboard
xclock
xcmiscproto
xcmsdb
xcompmgr
xconsole
xcursor-themes
xcursorgen
xdbedizzy
xditview
xdm
xdpyinfo
xdriinfo
xedit
xerces-c
xeus
xev
xextproto
xeyes
xf86bigfontproto
xf86dga
xf86dgaproto
xf86driproto
xf86miscproto
xf86rushproto
xf86vidmodeproto
xfd
xfindproxy
xfontsel
xfs
xfsinfo
xfwp
xgamma
xgboost
xgc
xhmm
xhost
xineramaproto
xinit
xinput
xios
xkbcomp
xkbdata
xkbevd
xkbprint
xkbutils
xkeyboard-config
xkill
xload
xlogo
xlsatoms
xlsclients
xlsfonts
xmag
xman
xmessage
xmh
xmlf90
xmlto
xmodmap
xmore
xorg-cf-files
xorg-docs
xorg-gtest
xorg-server
xorg-sgml-doctools
xphelloworld
xplor-nih
xplsprinters
xpr
xprehashprinterlist
xprop
xproto
xproxymanagementprotocol
xqilla
xrandr
xrdb
xrefresh
xrootd
xrx
xsbench
xscope
xsd
xsdk
Spack BundlePackage: a group of other packages ( #11981 )
2019-08-22 11:08:23 -07:00
xsdktrilinos
xset
xsetmode
xsetpointer
xsetroot
xsimd
xsm
xstdcmap
xtensor
xtensor-python
xterm
xtl
xtrans
xtrap
xts
xvidtune
xvinfo
xwd
xwininfo
xwud
xxhash
xz
yajl
yambo
yaml-cpp
yara
yasm
yorick
z3
zeromq
zfp
zip
zlib
zoltan
zsh
zstd
zstd: fix build linking error ( #12413 )
2019-08-13 21:09:25 -05:00
