a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
48 lines
1.6 KiB
Python
48 lines
1.6 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class Muscle(MakefilePackage):
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"""MUSCLE is one of the best-performing multiple alignment programs
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according to published benchmark tests, with accuracy and speed
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that are consistently better than CLUSTALW."""
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homepage = "http://drive5.com/muscle/"
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version('3.8.31', sha256='43c5966a82133bd7da5921e8142f2f592c2b5f53d802f0527a2801783af809ad')
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version('3.8.1551', sha256='c70c552231cd3289f1bad51c9bd174804c18bb3adcf47f501afec7a68f9c482e')
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@property
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def build_directory(self):
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if self.spec.satisfies('@3.8.31'):
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return 'src'
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else:
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return '.'
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def url_for_version(self, version):
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fmt_new = 'https://drive5.com/muscle/downloads{0}/muscle{0}_src.tar.gz'
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fmt_old = 'https://drive5.com/muscle/muscle_src_{0}.tar.gz'
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if version == Version('3.8.31'):
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return fmt_new.format(version.dotted)
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else:
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return fmt_old.format(version.dotted)
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def edit(self, spec, prefix):
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mkfile_name = 'Makefile'
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if self.spec.satisfies('@3.8.31'):
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mkfile_name = 'mk'
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makefile = FileFilter(join_path(self.build_directory, mkfile_name))
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makefile.filter('-static', '')
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makefile.filter('-funroll-loops', '')
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def install(self, spec, prefix):
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mkdirp(prefix.bin)
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install(join_path(self.build_directory, 'muscle'), prefix.bin)
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