40 lines
1.4 KiB
Python
40 lines
1.4 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Eem(MakefilePackage):
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"""EEM is a program to extract the gene group and expression modules
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that are co-expressed in the mRNA expression data."""
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homepage = "http://www.scls.riken.jp/scruise/software/eem.html"
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url = "http://www.scls.riken.jp/wp-content/uploads/2014/07/eemParallel_1.0.1.tar.gz"
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version("1.0.1", sha256="f617ea7350fce3b2581c814f70bda4427cbab83aac54a2dcadb36e8193f300bb")
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variant("K", default=False, description="Build for K computer")
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depends_on("mpi")
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build_directory = "src"
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patch("add_include.patch")
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def edit(self, spec, prefix):
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settings = FileFilter("./src/local_settings.mk")
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settings.filter("$(HOME)/local", prefix, string=True)
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settings.filter("mpicxx", self.spec["mpi"].mpicxx, string=True)
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if "+K" in self.spec:
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settings.filter("CXXFLAGS= -Wall -Wno-sign-compare -g", "CXXFLAGS=", string=True)
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settings.filter(
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"CXXFLAGS+= -std=c++11 -DHAVE_UNORDERED_MAP",
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"CXXFLAGS+= -DHAVE_UNORDERED_MAP",
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string=True,
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)
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settings.filter("CXXFLAGS+= -DHAVE_SHUFFLE", "#CXXFLAGS+= -DHAVE_SHUFFLE", string=True)
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