49 lines
1.9 KiB
Python
49 lines
1.9 KiB
Python
# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack.package import *
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class Genomeworks(CMakePackage, CudaPackage):
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"""SDK for GPU accelerated genome assembly and analysis."""
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homepage = "https://clara-parabricks.github.io/GenomeWorks/"
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url = "https://github.com/clara-parabricks/GenomeWorks/archive/v0.5.3.tar.gz"
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git = "https://github.com/clara-parabricks/GenomeWorks.git"
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version("0.5.3", tag="v0.5.3", submodules=True)
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version("0.5.2", tag="v0.5.2", submodules=True)
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version("0.5.1", tag="v0.5.1", submodules=True)
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version("0.5.0", tag="v0.5.0", submodules=True)
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version("0.4.4", tag="v0.4.4", submodules=True)
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version("0.4.3", tag="v0.4.3", submodules=True)
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version("0.4.0", tag="v0.4.0", submodules=True)
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version("0.3.0", tag="v0.3.0", submodules=True)
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version("0.2.0", tag="v0.2.0", submodules=True)
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depends_on("cmake@3.10.2:", type=("build"))
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depends_on("cuda@11:", type=("build", "run"))
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depends_on("python@3.6.7:", type=("build", "run"))
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# Disable CUB compilation, as it is already included in CUDA 11.
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# See https://github.com/clara-parabricks/GenomeWorks/issues/570
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# This patch breaks GenomeWorks with Cuda <11, cuda@11: is
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# therefore used as dependency.
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patch("3rdparty.patch")
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def cmake_args(self):
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args = []
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spec = self.spec
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if "+cuda" in spec:
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args.append("-DWITH_CUDA=ON")
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args.append("-Dgw_cuda_gen_all_arch=ON")
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args.append("-DTHRUST_IGNORE_CUB_VERSION_CHECK=ON")
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cuda_arch = spec.variants["cuda_arch"].value
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if cuda_arch != "none":
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args.append("-DCUDA_FLAGS=-arch=sm_{0}".format(cuda_arch[0]))
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else:
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args.append("-DWITH_CUDA=OFF")
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return args
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