a8ccb8e116
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
33 lines
1.1 KiB
Python
33 lines
1.1 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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from spack import *
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class EaUtils(MakefilePackage):
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"""Command-line tools for processing biological sequencing data. Barcode
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demultiplexing, adapter trimming, etc. Primarily written to support an
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Illumina based pipeline - but should work with any FASTQs."""
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homepage = "http://expressionanalysis.github.io/ea-utils/"
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url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz"
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version('1.04.807', sha256='aa09d25e6aa7ae71d2ce4198a98e58d563f151f8ff248e4602fa437f12b8d05f')
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depends_on('subversion')
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depends_on('zlib')
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depends_on('gsl')
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depends_on('bamtools')
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# perl module required for make check, which is included in the default
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# target
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depends_on('perl', type='build')
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build_directory = 'clipper'
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def edit(self, spec, prefix):
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with working_dir('clipper'):
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makefile = FileFilter('Makefile')
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makefile.filter('/usr', prefix)
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