24c01d57cf
* fix remaining flake8 errors * imports: sort imports everywhere in Spack We enabled import order checking in #23947, but fixing things manually drives people crazy. This used `spack style --fix --all` from #24071 to automatically sort everything in Spack so PR submitters won't have to deal with it. This should go in after #24071, as it assumes we're using `isort`, not `flake8-import-order` to order things. `isort` seems to be more flexible and allows `llnl` mports to be in their own group before `spack` ones, so this seems like a good switch.
41 lines
1.3 KiB
Python
41 lines
1.3 KiB
Python
# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import glob
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from spack import *
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class PyMixedhtseq(PythonPackage):
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"""HTSeq for mixed single and paired end reads"""
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homepage = "https://github.com/schae234/MixedHTSeq"
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url = "https://github.com/schae234/MixedHTSeq/archive/v0.1.0.tar.gz"
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version('0.1.0', sha256='234689c8743ae2ba7ad13bc1809a5248184a4b8d16112d5413e09164ab67e157')
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depends_on('python@2.5:2.8', type=('build', 'run'))
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depends_on('py-numpy', type=('build', 'run'))
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depends_on('py-htseq', type=('build', 'run'))
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depends_on('py-ipython', type=('build', 'run'))
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depends_on('py-pandas', type=('build', 'run'))
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depends_on('py-setuptools', type='build')
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@run_after('install')
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def install_scripts(self):
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shebang = '#!{0}\n'.format(self.spec['python'].command)
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for fname in glob.glob('scripts/*.py'):
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filter_file('^#!.*', '', fname)
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with open(fname, 'r') as orig:
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fdata = orig.read()
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with open(fname, 'w') as new:
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new.write(shebang + fdata)
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set_executable(fname)
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mkdirp(self.prefix.bin)
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install_tree('scripts', self.prefix.bin)
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